genome / scrna_mutationsLinks
Supplementary data for Petti, et al 2019 scRNA mutation publication
☆16Updated 2 years ago
Alternatives and similar repositories for scrna_mutations
Users that are interested in scrna_mutations are comparing it to the libraries listed below
Sorting:
- ☆28Updated 6 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated 4 months ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated last month
- ☆48Updated 11 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- ☆52Updated last year
- Toolkit for single-cell copy number analysis☆25Updated last week
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- scover☆24Updated 2 years ago
- ☆39Updated 3 months ago
- ☆19Updated 5 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago