Supplementary data for Petti, et al 2019 scRNA mutation publication
☆16Feb 1, 2023Updated 3 years ago
Alternatives and similar repositories for scrna_mutations
Users that are interested in scrna_mutations are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mutation(barcode) caller for 10x single cell data☆44Jun 14, 2020Updated 5 years ago
- LongSom tool for long-reads☆11May 20, 2025Updated 10 months ago
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 3 years ago
- Single-Cell Genotyping Tool☆217Oct 2, 2023Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- Single-cell Iso Prep☆17Oct 28, 2023Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Aug 9, 2022Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Oct 17, 2024Updated last year
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆37Nov 27, 2024Updated last year
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Feb 26, 2018Updated 8 years ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- ☆12Jun 29, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated last year
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Feb 3, 2022Updated 4 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- Displaying Strava stats on a Inky Impressions e-ink display☆13Jul 8, 2025Updated 9 months ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆13May 4, 2022Updated 3 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- Filter and prioritize fusion calls☆20Feb 24, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12Apr 16, 2021Updated 4 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- ☆19Oct 23, 2023Updated 2 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆23Apr 3, 2025Updated last year
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆81Oct 29, 2024Updated last year
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Jul 7, 2022Updated 3 years ago
- GWAS genetics Fine-mapping method☆17May 17, 2024Updated last year
- ☆12Nov 9, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆10Sep 12, 2025Updated 7 months ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆13Jun 9, 2022Updated 3 years ago
- ☆36Nov 29, 2021Updated 4 years ago
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 2 months ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆129Sep 24, 2024Updated last year