genome / scrna_mutationsLinks
Supplementary data for Petti, et al 2019 scRNA mutation publication
☆16Updated 2 years ago
Alternatives and similar repositories for scrna_mutations
Users that are interested in scrna_mutations are comparing it to the libraries listed below
Sorting:
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆28Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated 2 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- ☆51Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆34Updated 6 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆12Updated 6 years ago
- ☆47Updated 9 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Toolkit for single-cell copy number analysis☆24Updated 3 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- ☆25Updated 3 years ago
- ☆34Updated 6 years ago