10XGenomics / single-cell-3prime-snp-clustering
☆22Updated 6 years ago
Alternatives and similar repositories for single-cell-3prime-snp-clustering:
Users that are interested in single-cell-3prime-snp-clustering are comparing it to the libraries listed below
- ☆33Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆47Updated 3 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- ATAC-seq Quality Control☆23Updated 2 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆31Updated 5 years ago
- ☆28Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆74Updated last week
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Updated 2 years ago
- ☆59Updated 6 months ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 6 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆35Updated 4 months ago
- ☆53Updated 4 years ago
- ☆37Updated 5 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago