10XGenomics / single-cell-3prime-snp-clustering
☆22Updated 7 years ago
Alternatives and similar repositories for single-cell-3prime-snp-clustering:
Users that are interested in single-cell-3prime-snp-clustering are comparing it to the libraries listed below
- ☆33Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆47Updated 3 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆20Updated 6 years ago
- ☆32Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆75Updated last month
- ☆16Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 3 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated 9 months ago
- A preprocessing and QC pipeline for HiChIP data☆36Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 7 months ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆28Updated 6 years ago
- ATAC-seq Quality Control☆23Updated 3 months ago