ElementoLab / scTCRseq
Processing of single cell RNAseq data for the recovery of TCRs in python
☆28Updated 4 years ago
Alternatives and similar repositories for scTCRseq:
Users that are interested in scTCRseq are comparing it to the libraries listed below
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆33Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 7 months ago
- ☆47Updated 3 months ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- ☆22Updated 7 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆23Updated 6 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- ☆53Updated last month
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆30Updated 7 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated last month
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated last month
- Supplementary files for our Aneuploidy Detection paper☆9Updated 6 years ago
- ☆59Updated 7 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- R package with motifs for use with chromVAR☆27Updated 7 years ago
- ☆47Updated 2 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- ☆37Updated 8 years ago