ElementoLab / scTCRseq
Processing of single cell RNAseq data for the recovery of TCRs in python
☆27Updated 4 years ago
Alternatives and similar repositories for scTCRseq:
Users that are interested in scTCRseq are comparing it to the libraries listed below
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆33Updated 5 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 6 months ago
- Fast motif matching in R☆46Updated last year
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- ☆22Updated 6 years ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- ☆47Updated 2 years ago
- ☆53Updated 4 years ago
- ☆60Updated 4 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆30Updated 7 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆34Updated 4 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 8 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 6 months ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 2 months ago
- ☆59Updated 6 months ago
- ☆38Updated 4 years ago
- ☆37Updated 8 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago