ElementoLab / scTCRseqLinks
Processing of single cell RNAseq data for the recovery of TCRs in python
☆29Updated 4 years ago
Alternatives and similar repositories for scTCRseq
Users that are interested in scTCRseq are comparing it to the libraries listed below
Sorting:
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆65Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 6 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- ☆34Updated 6 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated this week
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆31Updated 7 years ago
- ☆58Updated last year
- scNMT-seq gastrulation☆42Updated 2 years ago
- Fast motif matching in R☆46Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated last year
- ☆55Updated 4 years ago
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆43Updated last year
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- ☆69Updated 7 years ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Updated 5 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆50Updated 2 years ago