Teichlab / embl-single-cell-course-2016Links
Material for lecture at the EMBL Single Cell Course 2016
☆47Updated 9 years ago
Alternatives and similar repositories for embl-single-cell-course-2016
Users that are interested in embl-single-cell-course-2016 are comparing it to the libraries listed below
Sorting:
- ☆71Updated last year
- ☆68Updated 2 years ago
- Scanpy use cases.☆88Updated 5 years ago
- ☆69Updated 7 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated 2 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Updated 6 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Updated 6 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- R package to access DoRothEA's regulons☆153Updated last year
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆99Updated 4 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆132Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 8 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆100Updated 9 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆83Updated 2 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- ☆55Updated 10 months ago
- Tools for single-cell data processing☆131Updated last year
- ☆59Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆103Updated 3 weeks ago
- Signac☆26Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Updated 3 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- Immunology-related bioinformatics data and tools☆76Updated last year
- ☆34Updated 6 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago