tinglab / reCAT
☆20Updated 6 years ago
Alternatives and similar repositories for reCAT:
Users that are interested in reCAT are comparing it to the libraries listed below
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆31Updated 5 years ago
- ☆33Updated 5 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 6 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- ☆45Updated 7 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆30Updated 2 years ago
- ☆39Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆28Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Updated 6 years ago
- R package with motifs for use with chromVAR☆25Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- ☆16Updated 5 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆19Updated 2 years ago