Code for DNA plasmid editing.
☆44Aug 17, 2018Updated 7 years ago
Alternatives and similar repositories for DNApy
Users that are interested in DNApy are comparing it to the libraries listed below
Sorting:
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 2 years ago
- Streaming sequence classification with web services ✓ 📌☆19Dec 8, 2022Updated 3 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 4 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆34Dec 26, 2022Updated 3 years ago
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- http://www.combio.pl/alfree☆23Jun 14, 2022Updated 3 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 8 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- repository-based plasmid design☆31Nov 28, 2022Updated 3 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 4 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- DNA plotting library for Python☆301Mar 20, 2024Updated last year
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 9 years ago
- Metagenomic classifier for CUDA-enabled GPUs☆16Jun 12, 2018Updated 7 years ago
- Readability enhancement tool for bioinformatics data file format☆29Jan 9, 2020Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 11 months ago
- 🎺 Plot DNA digestion band patterns with Python☆20May 12, 2025Updated 9 months ago
- Computational method for Comparative ReConstruction of genome-scale metabolic networks☆21Mar 23, 2018Updated 7 years ago
- a DNA assembly library☆23Aug 13, 2025Updated 6 months ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆21Jul 22, 2023Updated 2 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Dec 27, 2018Updated 7 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated last year
- Code for paper: Localized matrix factorization for recommendation based on matrix block diagonal forms☆10Jan 27, 2015Updated 11 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- Efficiently keep track of changes to genomes☆38Jul 22, 2024Updated last year
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- A message queue for genomic surveillance☆19Oct 14, 2021Updated 4 years ago
- 🎨 Python library to plot multi-part genetic constructs☆25Apr 9, 2025Updated 10 months ago
- Adaptive semi-global banded alignment on string graphs☆66May 4, 2018Updated 7 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 8 years ago