Alternatives and similar repositories for SeqTUI

Users that are interested in SeqTUI are comparing it to the libraries listed below

• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated last year
• jeanmanguy / spideog
  🐦 spideog - Command line utility for Kraken2 reports.
  ☆11Updated 5 years ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated 3 months ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆14Updated 2 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆35Updated 5 months ago
• luizirber / niffler
  Simple and transparent support for compressed files.
  ☆81Updated 11 months ago
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆101Updated 7 months ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆26Updated 8 months ago
• bacpop / sketchlib.rust
  Fast sequence distance estimates
  ☆26Updated last month
• sriram98v / phylo-rs
  A Rust-based library for phylogenetic analysis and manipulation
  ☆16Updated 2 months ago
• Rbfinch / grepq
  quickly filter fastq files by matching sequences to a set of regex patterns
  ☆58Updated last month
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆106Updated 2 weeks ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated last year
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• 38 / grass
  ☆22Updated 3 years ago
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆20Updated last month
• ekg / pca
  PCA in rust
  ☆16Updated 2 years ago
• rust-seq / packed-seq
  Bitpacked sequence trait and implementation
  ☆16Updated last week
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 2 months ago
• 10XGenomics / orbit
  Rust wrapper for STAR aligner
  ☆18Updated last week
• chfi / waragraph
  ☆29Updated last year
• simonpenel / light_phylogeny
  Light phylogeny library for Rust
  ☆10Updated 3 months ago
• tfenne / pipebuffer
  A command line program for large scale buffering between piped programs
  ☆16Updated 4 years ago
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆35Updated last week
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆12Updated 9 months ago
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆40Updated 9 months ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated last year