Run Python functions locally or in the cloud. Built for computational science.
☆23Oct 4, 2023Updated 2 years ago
Alternatives and similar repositories for lug
Users that are interested in lug are comparing it to the libraries listed below
Sorting:
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Python CLI for alignment-free genomics.☆13Feb 11, 2026Updated last month
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- GenNotes – public consensus annotation of genetic variants☆11Mar 27, 2016Updated 9 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 7 months ago
- Toolchest Python client☆15Sep 6, 2023Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- ☆14Dec 18, 2023Updated 2 years ago
- µbinfie blog☆19Jul 21, 2025Updated 8 months ago
- mutation testing for R☆16Nov 11, 2024Updated last year
- ☆12Sep 27, 2023Updated 2 years ago
- Biology-related fake data provider for Python Faker☆22Mar 8, 2026Updated last week
- ☆15Aug 1, 2021Updated 4 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 7 years ago
- Pynocular is a lightweight ORM that lets you query your database using Pydantic models and asyncio☆12May 24, 2022Updated 3 years ago
- Read fcs files.☆12Nov 13, 2025Updated 4 months ago
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 8 years ago
- A python tool for parsing pedigree files☆16Aug 29, 2017Updated 8 years ago
- ☆15Apr 10, 2024Updated last year
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 8 years ago
- Docker containers for bioinformatics with a small footprint☆23Dec 18, 2025Updated 3 months ago
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆22Feb 15, 2023Updated 3 years ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆26Updated this week
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago
- A go package to glitch images based on input expressions☆11Apr 30, 2021Updated 4 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Oct 4, 2024Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 7 months ago
- Create cwl workflows by writing a simple Python script☆40Apr 29, 2020Updated 5 years ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- Bioinformatics lecture slides 2014☆11Jun 26, 2016Updated 9 years ago
- SSH Two-factor Authentication Module in Python☆15Dec 31, 2013Updated 12 years ago
- ☆10Dec 14, 2016Updated 9 years ago
- A Demultiplexing Tool for Illumina Sequencers☆10Sep 27, 2016Updated 9 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago