evolbioinfo / gotree
Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.
☆130Updated 6 months ago
Alternatives and similar repositories for gotree:
Users that are interested in gotree are comparing it to the libraries listed below
- Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.☆85Updated 6 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆85Updated last year
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆102Updated 2 weeks ago
- SKESA assembler☆116Updated 6 months ago
- Split k-mer analysis – version 2☆82Updated 2 months ago
- Foreign Contamination Screening caller scripts and documentation☆129Updated last month
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated last month
- Assemble bacterial isolate genomes from Nanopore reads☆125Updated 3 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆96Updated 2 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆185Updated 9 months ago
- Massively parallel phylogenetic placement of genetic sequences☆82Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆187Updated last year
- DAS Tool☆147Updated 11 months ago
- a short-read polishing tool for long-read assemblies☆157Updated 10 months ago
- Antibiotic resistance prediction in minutes☆108Updated 5 months ago
- Supporting code for uncultivated gut virus manuscript☆71Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆142Updated last week
- Create a tree using Mash distances☆162Updated last year
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆98Updated last month
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆108Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆100Updated last month
- Nanopore data assembler☆150Updated 3 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- Best-fit model selection☆81Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆196Updated 9 months ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 11 months ago
- A toolbox for comparative genomics.☆103Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 6 months ago
- DDBJ Fast Annotation and Submission Tool☆80Updated 2 months ago