Alternatives and similar repositories for gotree:

Users that are interested in gotree are comparing it to the libraries listed below

• evolbioinfo / goalign
  Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
  ☆83Updated 5 months ago
• neherlab / pangraph
  A bioinformatic toolkit to align genome assemblies into pangenome graphs
  ☆98Updated this week
• lskatz / mashtree
  Create a tree using Mash distances
  ☆158Updated last year
• shenwei356 / LexicMap
  LexicMap: efficient sequence alignment against millions of prokaryotic genomes
  ☆134Updated this week
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆181Updated 7 months ago
• rpetit3 / dragonflye
  Assemble bacterial isolate genomes from Nanopore reads
  ☆121Updated last month
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆118Updated last month
• pirovc / genome_updater
  Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redunda…
  ☆150Updated 2 months ago
• genomicsITER / NanoCLUST
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
  ☆107Updated last year
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆93Updated 2 years ago
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆82Updated last year
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆107Updated 3 months ago
• cmks / DAS_Tool
  DAS Tool
  ☆146Updated 10 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆68Updated last year
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆185Updated 7 months ago
• ddarriba / modeltest
  Best-fit model selection
  ☆80Updated 11 months ago
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆130Updated this week
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆82Updated 2 years ago
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆92Updated 3 months ago
• rrwick / Polypolish
  a short-read polishing tool for long-read assemblies
  ☆154Updated 8 months ago
• ncbi / SKESA
  SKESA assembler
  ☆114Updated 4 months ago
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆72Updated last year
• esteinig / nanoq
  Minimal but speedy quality control for nanopore reads in Rust
  ☆134Updated 5 months ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆113Updated 9 months ago
• replikation / What_the_Phage
  WtP: Phage identification via nextflow and docker or singularity
  ☆104Updated last week
• iqbal-lab-org / pandora
  Pan-genome inference and genotyping with long noisy or short accurate reads
  ☆113Updated 2 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 5 months ago
• connor-lab / ncov2019-artic-nf
  A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…
  ☆91Updated last year
• rcedgar / usearch12
  Open-source usearch
  ☆107Updated 8 months ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 3 years ago