Alternatives and similar repositories for pipetaxon

Users that are interested in pipetaxon are comparing it to the libraries listed below

• FredHutch / microbial-rnaseq
  Analysis of RNAseq data from (host-associated) microbial mixtures
  ☆12Updated 5 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆19Updated 6 years ago
• zorino / kaamer
  kaamer - protein identification based on amino acid kmers
  ☆12Updated 2 years ago
• bendmorris / taxiphy
  Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.
  ☆16Updated 9 years ago
• kloetzl / biozsh
  the z in bioinformatics
  ☆33Updated 2 years ago
• bschiffthaler / kogia
  Docker containers for bioinformatics with a small footprint
  ☆23Updated 2 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 6 years ago
• ababaian / bioSyntax-archive
  Syntax highlighting for computational biology
  ☆16Updated 7 years ago
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• MonashBioinformaticsPlatform / RNAsik-pipe
  RNAsik - more than just a pipeline
  ☆13Updated last year
• ukhsa-collaboration / PHEnix
  Public Health England SNP calling pipeline.
  ☆37Updated 7 years ago
• phiweger / darkq
  A message queue for genomic surveillance
  ☆19Updated 4 years ago
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆30Updated last year
• goeckslab / isoseq-browser
  ☆13Updated 8 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• KThorellGroup / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated 10 months ago
• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated 2 years ago
• spacocha / Distribution-based-clustering
  Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …
  ☆14Updated 6 years ago
• shenwei356 / ncbi_acc2gtdb_acc
  Mapping NCBI Genbank accession to GTDB accession
  ☆13Updated 4 years ago
• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 5 years ago
• aziele / alfpy
  http://www.combio.pl/alfree
  ☆23Updated 3 years ago
• danknights / mwas
  Perform microbiome-wide association studies with a variety of models
  ☆18Updated 8 years ago
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆24Updated 2 months ago
• lotharwissler / bioinformatics
  ☆10Updated 13 years ago
• bhattlab / StrainSifter
  A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).
  ☆19Updated 7 years ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• jlanga / smsk
  Snakemake skeleton - Build workflows with Snakemake
  ☆19Updated last year
• phac-nml / biohansel
  Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
  ☆28Updated 10 months ago