The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.
☆21Jan 3, 2013Updated 13 years ago
Alternatives and similar repositories for Model-SEED-core
Users that are interested in Model-SEED-core are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sequencing and analysis of crAssphage regions from around the globe☆19Apr 7, 2020Updated 6 years ago
- An object store for scientific data☆52Mar 5, 2026Updated 4 months ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- Genetic coordinates so simple, it feels like MAGIC!☆10Jan 29, 2026Updated 5 months ago
- ☆13Jun 9, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The BV-BRC Command Line Interface☆18Aug 6, 2025Updated 11 months ago
- Updated fork of T. Finley's PyGLPK module☆17Jan 26, 2026Updated 5 months ago
- MkDocs Embed External Markdown plugin that allow to inject section or all full markdown content from a given url. The goal is to show dif…☆11Feb 24, 2025Updated last year
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Reproducible GSEA Benchmarking☆14May 14, 2026Updated 2 months ago
- Assembling phage particles one protein at a time☆15May 4, 2026Updated 2 months ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated last month
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated 2 years ago
- various sources and scripts for genomic research software☆10May 11, 2015Updated 11 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Rapid Annotation Transfer Tool☆10May 21, 2025Updated last year
- OGRT Runtime Tracker☆12Dec 4, 2019Updated 6 years ago
- Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.☆15Mar 3, 2025Updated last year
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- Calypso CalDAV and CardDAV server☆17Dec 2, 2017Updated 8 years ago
- ☆21Sep 8, 2023Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆17Apr 10, 2021Updated 5 years ago
- Data Science template with focus on prewritten workflows☆14Sep 30, 2015Updated 10 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Debhelper (and CDBS) modules for building configuration packages☆16Apr 17, 2026Updated 3 months ago
- COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R☆18May 6, 2026Updated 2 months ago
- A shell tool to search and select bits out of a JSON document.☆21Jul 20, 2020Updated 6 years ago
- Fast and Accurate Classification of Sequences using Bloom filters☆16Apr 19, 2023Updated 3 years ago
- My blog.☆16Aug 8, 2025Updated 11 months ago
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- Pivotal Tracker API client for Go (Golang)☆11Dec 27, 2023Updated 2 years ago
- ☆15Feb 13, 2024Updated 2 years ago
- Pipeline for Ribosome Profiling Data☆19Jul 5, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Dec 4, 2017Updated 8 years ago
- ☆29Mar 16, 2023Updated 3 years ago
- Naming avoiding ambiguity automatically assigning valid identifiers☆32Mar 18, 2021Updated 5 years ago
- A demo implementation of Succinct de Bruijn Graphs.☆25Jun 30, 2013Updated 13 years ago
- Scripts and instructions for submitting annotated microbial genomes to Genbank☆16Feb 23, 2016Updated 10 years ago
- Doc, snippets and code for Sipeed Maix Amigo - Micropython enabled dev widget.☆28Oct 30, 2020Updated 5 years ago