Alternatives and similar repositories for t-cell-relation-extraction

Users that are interested in t-cell-relation-extraction are comparing it to the libraries listed below

• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆46Updated 5 years ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 4 years ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆18Updated 3 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 4 years ago
• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆40Updated 4 years ago
• opentargets / stopReasons
  Analysis on stop reasons
  ☆10Updated last year
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 6 years ago
• SchubertLab / epytope
  ☆24Updated last month
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆26Updated 5 years ago
• vals / python-gprofiler
  ☆13Updated 6 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 3 years ago
• Shamir-Lab / NEMO
  ☆17Updated 5 years ago
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆28Updated last year
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago
• mruffalo / sc-rna-seq-pipeline
  ☆22Updated 6 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆34Updated 9 months ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 3 years ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆45Updated this week
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆54Updated 6 years ago
• viash-io / viash
  script + metadata = standalone component
  ☆44Updated last week
• hammerlab / cohorts
  Utilities for analyzing mutations and neoepitopes in patient cohorts
  ☆20Updated 7 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• andreaskapou / BPRMeth
  Modelling DNA methylation profiles
  ☆24Updated 5 years ago
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆20Updated last year
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• BaderLab / netDx
  R package with netDx software and data for examples
  ☆12Updated 2 years ago
• openvax / topiary
  Predict mutated T-cell epitopes from sequencing data
  ☆30Updated 10 months ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆29Updated 8 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago