Literature mining for T cell relations
☆23Aug 5, 2022Updated 3 years ago
Alternatives and similar repositories for t-cell-relation-extraction
Users that are interested in t-cell-relation-extraction are comparing it to the libraries listed below
Sorting:
- ☆25Dec 5, 2025Updated 2 months ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Mar 15, 2018Updated 7 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- Highly informative TCR representation model☆15Nov 26, 2025Updated 3 months ago
- NILC-USP at SemEval-2017 Task 4: A Multi-view Ensemble for Twitter Sentiment Analysis☆10Feb 19, 2017Updated 9 years ago
- HLA-II ligand predictor.☆46Apr 6, 2023Updated 2 years ago
- Python package for matrix storage and operations on hetnets☆14Mar 30, 2023Updated 2 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 10 months ago
- A convolutional neural network model for relation extraction.☆12Mar 24, 2023Updated 2 years ago
- ☆12Apr 16, 2021Updated 4 years ago
- Human Primary T cells: A Practical Guide☆15Sep 18, 2018Updated 7 years ago
- ☆15Jun 9, 2018Updated 7 years ago
- Convert TCR gene names☆15Dec 26, 2025Updated 2 months ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- Python library for immune repertoire analysis☆17Updated this week
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Jul 26, 2019Updated 6 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Jan 22, 2026Updated last month
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 5 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆22Feb 17, 2025Updated last year
- Scientific Name Parser☆36Jan 17, 2026Updated last month
- ☆48Jul 7, 2022Updated 3 years ago
- ☆19Feb 17, 2021Updated 5 years ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- imNet: a Sequence Network Construction Toolkit☆20Jul 7, 2020Updated 5 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Python-based framework for computational immunomics☆40Jul 7, 2021Updated 4 years ago
- ☆75Feb 4, 2024Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Repo for downloading and storing OMIM data☆19Oct 6, 2016Updated 9 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22May 11, 2020Updated 5 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆22May 21, 2024Updated last year
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Jun 20, 2022Updated 3 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆32Apr 9, 2025Updated 10 months ago