hammerlab / t-cell-relation-extraction

Related projects ⓘ

Alternatives and complementary repositories for t-cell-relation-extraction

• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 2 years ago
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆24Updated 3 years ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 3 years ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆17Updated 2 years ago
• bhklab / PGx_Guidelines
  ☆10Updated 3 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆34Updated 2 years ago
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆27Updated 5 months ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆24Updated last year
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆22Updated 6 years ago
• insitro / AllelicSeries
  Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…
  ☆12Updated this week
• Shamir-Lab / NEMO
  ☆15Updated 4 years ago
• cancerdatasci / demeter
  Deconvolution of seed effects from gene effects in large scale RNAi screens
  ☆10Updated 6 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• starstorms9 / geco
  GECO (Gene Expression Clustering Optimization; theGECOapp.com) is a minimalistic GUI app that utilizes non-linear reduction techniques to…
  ☆9Updated last year
• opentargets / genetics-finemapping
  Fine-mapping pipeline for Open Targets Genetics
  ☆25Updated 2 years ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆29Updated 11 months ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated last year
• mruffalo / sc-rna-seq-pipeline
  ☆23Updated 4 years ago
• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆39Updated 3 years ago
• kmayerb / tcrdist2
  Quantifiable predictive features define epitope-specific T cell receptor repertoires
  ☆14Updated last year
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆21Updated 3 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 7 years ago
• TimothyTickle / single_cell_analysis
  Introduction to single-cell RNA-Seq analysis workshop
  ☆15Updated 7 years ago
• enricoferrero / TargetPred
  In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data
  ☆17Updated 6 years ago
• cole-trapnell-lab / cicero
  ☆11Updated 9 months ago
• VariantEffect / MaveReferences
  Table of Multiplexed Assay of Variant Effect (MAVE) studies
  ☆10Updated last year
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• vals / python-gprofiler
  ☆12Updated 5 years ago
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆22Updated 3 months ago