vladsavelyev / bed_annotationLinks
Assign gene names to regions in a BED file
☆24Updated 2 years ago
Alternatives and similar repositories for bed_annotation
Users that are interested in bed_annotation are comparing it to the libraries listed below
Sorting:
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- ☆23Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- BISulfite-seq CUI Toolkit☆22Updated last month
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- ☆13Updated 7 years ago
- Find and characterise transposable element insertions☆21Updated 2 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 2 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- ☆22Updated 6 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆36Updated 2 years ago
- Somatic point mutation caller☆29Updated last month
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Genomic Association Tester☆31Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago