cbg-ethz / SCICoNE
Single-cell copy number calling and event history reconstruction.
☆20Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for SCICoNE
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 6 months ago
- ☆33Updated 5 years ago
- Clone identification from single-cell data☆59Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆37Updated last week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆21Updated 2 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- ☆29Updated 5 years ago
- ☆34Updated 6 months ago
- ☆31Updated 5 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- ☆27Updated 3 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ☆40Updated 3 months ago
- ☆30Updated 6 months ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆22Updated 2 years ago
- <<------ Use SnapATAC!!☆25Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- ☆29Updated 2 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated last week
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- ☆16Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆29Updated last year
- ☆17Updated 5 years ago
- ☆37Updated 4 years ago