cbg-ethz / SCICoNELinks
Single-cell copy number calling and event history reconstruction.
☆28Updated last year
Alternatives and similar repositories for SCICoNE
Users that are interested in SCICoNE are comparing it to the libraries listed below
Sorting:
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated last month
- ☆34Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- ☆33Updated last year
- An R package to time somatic mutations☆65Updated 5 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- ☆54Updated last year
- Toolkit for single-cell copy number analysis☆29Updated last month
- Pipeline for designing custom probes against human genes☆20Updated 2 weeks ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- ☆38Updated 5 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 8 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- ☆40Updated 5 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- An R package to plot maps of clone distributions in somatic evolution☆19Updated 2 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- ☆34Updated 6 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆23Updated 5 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated 2 weeks ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated 2 weeks ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Updated 3 years ago