cbg-ethz / SCICoNELinks
Single-cell copy number calling and event history reconstruction.
☆25Updated 6 months ago
Alternatives and similar repositories for SCICoNE
Users that are interested in SCICoNE are comparing it to the libraries listed below
Sorting:
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆40Updated 7 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated last year
- ☆34Updated 6 years ago
- ☆38Updated 5 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Tools which deal with multiple single cell measurements☆23Updated last week
- ☆21Updated 5 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated last month
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆13Updated last month
- ☆32Updated 5 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- ☆32Updated 6 years ago
- Pipeline for designing custom probes against human genes☆16Updated 7 months ago
- ☆17Updated last year
- ☆49Updated 10 months ago
- Toolkit for single-cell copy number analysis☆23Updated last week
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Next-Gen Sequencing tools from the Horvath Lab☆43Updated last month
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year