cbg-ethz / SCICoNELinks
Single-cell copy number calling and event history reconstruction.
☆27Updated 9 months ago
Alternatives and similar repositories for SCICoNE
Users that are interested in SCICoNE are comparing it to the libraries listed below
Sorting:
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 3 weeks ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 4 months ago
- ☆34Updated 6 years ago
- ☆32Updated 8 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆42Updated 10 months ago
- ☆51Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆17Updated last month
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Toolkit for single-cell DNA methylation analysis.☆42Updated last week
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆19Updated 3 weeks ago
- Mapping pipeline for snmC-seq based technologies.☆21Updated 2 years ago
- Pipeline for designing custom probes against human genes☆18Updated 10 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- ☆39Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆38Updated last month
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago