GfellerLab / EPICLinks
Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
☆84Updated 2 years ago
Alternatives and similar repositories for EPIC
Users that are interested in EPIC are comparing it to the libraries listed below
Sorting:
- R package for Pathway RespOnsive GENe activity inference☆106Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 7 months ago
- An R interface to enrichR☆91Updated 6 months ago
- ☆58Updated 11 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 3 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆95Updated 10 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 7 years ago
- ☆71Updated last year
- Unified access to several second-generation deconvolution methods☆73Updated 3 weeks ago
- An R toolkit for estimation of cell composition from bulk expression data☆75Updated last month
- R package for single cell and other data analysis using diffusion maps☆88Updated 8 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆56Updated last year
- ☆63Updated 4 years ago
- ☆68Updated last year
- Mouse cell atlas☆60Updated 5 years ago
- ☆55Updated 4 years ago
- ☆86Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆95Updated 2 years ago
- R package to access DoRothEA's regulons☆149Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- A continually expanding collection of cancer genomics notes and data☆107Updated last week
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆86Updated last month
- ☆64Updated last year
- ☆60Updated 4 years ago
- scWGCNA☆61Updated 2 years ago