Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
☆87Jul 12, 2023Updated 3 years ago
Alternatives and similar repositories for EPIC
Users that are interested in EPIC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell types enrichment analysis☆213May 27, 2024Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆547Jul 6, 2026Updated 2 weeks ago
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- Data files for the molecular modelling course☆13Jan 26, 2024Updated 2 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆24Apr 5, 2023Updated 3 years ago
- ☆62Jun 21, 2022Updated 4 years ago
- An R package for drug response prediction and drug-gene association prediction.☆32Jun 13, 2026Updated last month
- ☆30Jul 8, 2018Updated 8 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆29Jan 9, 2021Updated 5 years ago
- CellNet, for cancer☆11Jul 14, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆27May 16, 2025Updated last year
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆115Oct 12, 2022Updated 3 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆98Jan 30, 2026Updated 5 months ago
- ConsensusTME Gene Sets and R Script☆41Jun 6, 2024Updated 2 years ago
- Identifying tumor cells at the single-cell level using machine learning☆51Nov 10, 2024Updated last year
- ☆19Oct 27, 2021Updated 4 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Classification of Single cells by Transfer Learning☆11Oct 11, 2025Updated 9 months ago
- ☆59Apr 28, 2020Updated 6 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- ☆29Sep 25, 2015Updated 10 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆346Jul 28, 2020Updated 5 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆334Feb 10, 2026Updated 5 months ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13May 1, 2023Updated 3 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- ☆22Apr 30, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆32May 12, 2020Updated 6 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆292Updated this week
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Curated list of TCGA resources☆61Nov 10, 2017Updated 8 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 8 years ago
- ☆120Sep 5, 2023Updated 2 years ago
- BiocompR is a R package build upon ggplot2 to improve commonly used plots dedicated to data comparison, dataset exploration and, ultimate…☆18Jan 15, 2025Updated last year