Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
☆85Jul 12, 2023Updated 2 years ago
Alternatives and similar repositories for EPIC
Users that are interested in EPIC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell types enrichment analysis☆210May 27, 2024Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆533Updated this week
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- Data files for the molecular modelling course☆13Jan 26, 2024Updated 2 years ago
- ☆60Jun 21, 2022Updated 3 years ago
- An R package for drug response prediction and drug-gene association prediction.☆25May 9, 2025Updated 11 months ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Apr 5, 2023Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- ☆30Jul 8, 2018Updated 7 years ago
- ☆26May 16, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 3 years ago
- CellNet, for cancer☆10Jul 14, 2022Updated 3 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 10 months ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 6 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆98Jan 30, 2026Updated 2 months ago
- ☆59Apr 28, 2020Updated 5 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- Identifying tumor cells at the single-cell level using machine learning☆50Nov 10, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 2, 2026Updated last week
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- ☆28Sep 25, 2015Updated 10 years ago
- ☆20Apr 30, 2025Updated 11 months ago
- ConsensusTME Gene Sets and R Script☆40Jun 6, 2024Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆334Jul 28, 2020Updated 5 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆316Feb 10, 2026Updated 2 months ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆32May 12, 2020Updated 5 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13May 1, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- ☆120Sep 5, 2023Updated 2 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆284Updated this week
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆47Jun 12, 2023Updated 2 years ago
- Curated list of TCGA resources☆59Nov 10, 2017Updated 8 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 7 years ago