A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.
☆52Dec 9, 2025Updated 4 months ago
Alternatives and similar repositories for GNNome
Users that are interested in GNNome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Mar 12, 2026Updated 3 weeks ago
- ☆42May 19, 2025Updated 10 months ago
- Learning to untangle genome assembly with graph neural networks.☆72Nov 17, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated last month
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 3 weeks ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- Centromere mapping and annotation pipeline☆23Feb 28, 2026Updated last month
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- A tool for summarizing, extracting, generating and modifying DNA sequences.☆23Dec 17, 2024Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 3 months ago
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Feb 25, 2026Updated last month
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆18Jan 12, 2026Updated 2 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆42Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C，Omni-C).☆90Jan 25, 2026Updated 2 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- ☆67Apr 9, 2024Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- A program for assessing the T2T genome continuity☆94Feb 28, 2026Updated last month
- ☆17Nov 19, 2025Updated 4 months ago
- A Tool for low Coverage HiFi Data Assembly☆40Dec 27, 2025Updated 3 months ago
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 3 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆50Mar 26, 2026Updated 2 weeks ago
- a python package for finding tandem repeats from genomic sequences☆31Mar 19, 2025Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- ☆18Jan 14, 2026Updated 2 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 2 months ago