yhg926 / MetaKSSDLinks
Instantaneous Metagenome Taxonomic Profiling with MetaKSSD
☆23Updated 3 weeks ago
Alternatives and similar repositories for MetaKSSD
Users that are interested in MetaKSSD are comparing it to the libraries listed below
Sorting:
- ☆24Updated 10 months ago
- ☆16Updated 5 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- download isfinder database☆13Updated 7 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 4 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- ☆33Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated last week
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated 11 months ago
- Discover and annotate the virome☆54Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 3 months ago
- Phage-Host Interaction Search Tool☆29Updated last year
- Bacterial GWAS analysis☆46Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Unified Human Gut Virome Catalog☆38Updated 2 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- ☆31Updated last month
- MAG Circularization Method☆32Updated 3 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago