Alternatives and similar repositories for RAPSearch2:

Users that are interested in RAPSearch2 are comparing it to the libraries listed below

• jonathancrabtree / Circleator
  Flexible circular visualization of genome-associated data with BioPerl and SVG.
  ☆47Updated 5 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated last month
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• ngs-docs / 2017-ucsc-metagenomics
  Workshop materials for shotgun metagenomics
  ☆36Updated 7 years ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆32Updated 3 years ago
• edamame-course / Metagenome
  ☆23Updated 6 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 10 months ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆46Updated 2 years ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆28Updated last month
• Shamir-Lab / Recycler
  This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…
  ☆58Updated 3 years ago
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆11Updated 8 years ago
• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆52Updated 2 years ago
• pachterlab / metakallisto
  Using kallisto for metagenomic analysis
  ☆50Updated 8 years ago
• emepyc / Blast2lca
  Calculates the lowest common ancestors of each query sequence in a Blast result
  ☆31Updated 7 years ago
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆26Updated 3 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 2 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆88Updated 4 months ago
• jiwoongbio / FMAP
  Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
  ☆26Updated last year
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆51Updated last year
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆60Updated 5 years ago
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆54Updated 3 years ago
• fanglab / mbin
  mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
  ☆25Updated 2 years ago
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 4 years ago
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆37Updated 5 months ago
• pirovc / metameta
  ☆23Updated 5 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• jts / nanopore-paper-analysis
  Code for nanopore paper
  ☆33Updated 9 years ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆54Updated this week