sharpton / shotmapLinks
A Shotgun Metagenome Annotation Pipeline
☆23Updated 8 years ago
Alternatives and similar repositories for shotmap
Users that are interested in shotmap are comparing it to the libraries listed below
Sorting:
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- transposable element typing pipeline☆19Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- ☆12Updated 9 months ago
- De novo VIral Genome Annotator☆23Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆24Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆20Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- ☆20Updated 8 years ago
- Quality control plotting for long reads☆10Updated last year