sharpton / shotmapLinks
A Shotgun Metagenome Annotation Pipeline
☆23Updated 8 years ago
Alternatives and similar repositories for shotmap
Users that are interested in shotmap are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 8 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated 11 months ago
- A comprehensive pipeline for short read metagenomic data☆24Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- ☆26Updated 2 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆35Updated last year
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 4 months ago
- Dadaist2 🟨 Highway to R☆13Updated 5 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- Toolkit for preparing genomes for submission to NCBI☆30Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last week
- Strain Prediction and Analysis with Representative SEquence☆20Updated 8 months ago
- Influenza genome analysis Nextflow workflow☆22Updated 3 weeks ago