A Shotgun Metagenome Annotation Pipeline
☆24Mar 24, 2017Updated 9 years ago
Alternatives and similar repositories for shotmap
Users that are interested in shotmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.☆16Jan 4, 2023Updated 3 years ago
- ☆53May 11, 2021Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆49Apr 14, 2020Updated 6 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆135Oct 6, 2023Updated 2 years ago
- ☆17May 22, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated last year
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated 2 years ago
- ☆12Aug 16, 2016Updated 9 years ago
- R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities☆20Jul 14, 2020Updated 6 years ago
- ☆19Nov 2, 2018Updated 7 years ago
- ☆25Feb 21, 2017Updated 9 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆68Jun 4, 2026Updated last month
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated 3 weeks ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 2 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 7 months ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 6 months ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 5 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆15Nov 3, 2017Updated 8 years ago
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 13 years ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆39May 25, 2023Updated 3 years ago
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- Reduced Alphabet based Protein similarity Search☆40Nov 30, 2020Updated 5 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Mar 21, 2026Updated 4 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- High throughput sequencing analysis tools☆30Apr 21, 2025Updated last year
- Metagenomic Analysis in Real Time☆31Jul 7, 2026Updated 2 weeks ago
- A robust, extensible metagenomics pipeline☆177Updated this week
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆68Aug 12, 2019Updated 6 years ago
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago