Alternatives and similar repositories for taxtastic:

Users that are interested in taxtastic are comparing it to the libraries listed below

• refweak / refweak
  A list of weak Bacterial assemblies in GenBank
  ☆18Updated 7 years ago
• linsalrob / partie
  PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…
  ☆25Updated 2 years ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated 2 months ago
• LANL-Bioinformatics / GOTTCHA
  Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:
  ☆23Updated 6 years ago
• nickloman / poredb
  ☆19Updated 8 years ago
• shendurelab / MetaPhase
  The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)
  ☆16Updated 6 years ago
• Ecogenomics / BamM
  Metagenomics-focused BAM file manipulation
  ☆16Updated 5 years ago
• rrwick / Catpac
  a Contig Alignment Tool for Pairwise Assembly Comparison
  ☆13Updated 5 years ago
• aziele / alfpy
  http://www.combio.pl/alfree
  ☆23Updated 2 years ago
• pirovc / metameta
  ☆23Updated 5 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 4 years ago
• dahak-metagenomics / dahak
  benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
  ☆21Updated 6 years ago
• alexcritschristoph / VRCA
  Identifying ViRal and Circular content in metAgenomes
  ☆11Updated 6 years ago
• eclarke / komplexity
  A method of assessing sequence complexity based on kmer frequencies
  ☆31Updated 6 years ago
• zheminzhou / SPARSE
  Strain Prediction and Analysis with Representative SEquence
  ☆18Updated 2 months ago
• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆12Updated last year
• camillescott / shmlast
  blast, shmlast
  ☆21Updated 4 years ago
• donovan-h-parks / biolib
  Python package for common tasks in bioinformatic.
  ☆13Updated last year
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 5 years ago
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 2 years ago
• KorfLab / CEGMA_v2
  The final version 2 release of our software to detect core genes in eukaryotic genomes
  ☆28Updated 9 years ago
• chrisquince / DESMAN
  De novo Extraction of Strains from MetAgeNomes
  ☆68Updated 4 years ago
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆29Updated last year
• SilvioWeging / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• prophyle / prophyle
  Accurate, resource-frugal and deterministic DNA sequence classifier.
  ☆33Updated this week
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆28Updated last month
• zhaoc1 / nanoflow
  Bioinformatics pipeline for nanopore sequencing data
  ☆10Updated 6 years ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆24Updated last year