fhcrc / taxtasticLinks
Create and maintain phylogenetic "reference packages" of biological sequences.
☆21Updated last week
Alternatives and similar repositories for taxtastic
Users that are interested in taxtastic are comparing it to the libraries listed below
Sorting:
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Python package for common tasks in bioinformatic.☆13Updated last year
- Find Unique genomic Regions☆29Updated 2 months ago
- ☆23Updated 5 years ago
- A list of weak Bacterial assemblies in GenBank☆18Updated 7 years ago
- simple and not slow ORF caller☆21Updated 7 years ago
- ☆19Updated 8 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Updated 6 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 weeks ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- blast, shmlast☆22Updated 4 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 5 months ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 5 months ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Updated 6 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Metagenomics-focused BAM file manipulation☆16Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- Simulate metagenomic short reads from one or more populations.☆26Updated 4 months ago
- MIRA sequence assembler☆29Updated 5 months ago