fhcrc / taxtasticLinks
Create and maintain phylogenetic "reference packages" of biological sequences.
☆22Updated 7 months ago
Alternatives and similar repositories for taxtastic
Users that are interested in taxtastic are comparing it to the libraries listed below
Sorting:
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- A list of weak Bacterial assemblies in GenBank☆18Updated 8 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Updated 7 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 7 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last month
- De novo Extraction of Strains from MetAgeNomes☆72Updated 5 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- http://www.combio.pl/alfree☆23Updated 3 years ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Updated 10 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Updated 2 years ago
- ☆33Updated 8 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆46Updated 6 years ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- ☆23Updated 6 years ago
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆65Updated 3 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Updated 2 years ago
- Predicting biosynthetic gene clusters in genomes☆42Updated 12 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- The MG-RAST Backend -- the API server☆46Updated 2 years ago
- SINA - Reference based multiple sequence alignment☆41Updated 5 years ago
- visualising sequence similarity with Circos☆41Updated 6 years ago
- Visualization of the pan-genome output by panX☆66Updated 7 months ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Updated 8 years ago
- An imagemagick-like frontend to Biopython SeqIO☆117Updated last year
- Simulate metagenomic short reads from one or more populations.☆26Updated last year
- Locus and lineage tests for bacterial GWAS☆28Updated 8 years ago
- ☆31Updated 4 years ago