Alternatives and similar repositories for taxtastic

Users that are interested in taxtastic are comparing it to the libraries listed below

• linsalrob / partie
  PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…
  ☆25Updated 2 years ago
• aziele / alfpy
  http://www.combio.pl/alfree
  ☆23Updated 3 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• prophyle / prophyle
  Accurate, resource-frugal and deterministic DNA sequence classifier.
  ☆36Updated last week
• hallamlab / metapathways2
  MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
  ☆33Updated 10 years ago
• LANL-Bioinformatics / GOTTCHA
  Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:
  ☆23Updated 6 years ago
• refweak / refweak
  A list of weak Bacterial assemblies in GenBank
  ☆18Updated 8 years ago
• ansariazim / treeBreaker
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Updated 7 years ago
• pirovc / metameta
  ☆23Updated 6 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• dahak-metagenomics / dahak
  benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
  ☆21Updated 7 years ago
• iqbal-lab / Mykrobe-predictor
  Antibiotic resistance predictions in minutes on a laptop
  ☆50Updated 6 years ago
• brian-cleary / LatentStrainAnalysis
  Partitioning and analysis methods for large, complex sequence datasets
  ☆38Updated 7 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆32Updated last month
• chrisquince / DESMAN
  De novo Extraction of Strains from MetAgeNomes
  ☆71Updated 5 years ago
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆50Updated 4 years ago
• mattloose / RUscripts
  Scripts for implementing read until and other examples.
  ☆31Updated 5 years ago
• jwintersinger / kablammo
  Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.
  ☆65Updated 3 years ago
• Shamir-Lab / Recycler
  This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…
  ☆58Updated 4 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• petercim / ClusterFinder
  Predicting biosynthetic gene clusters in genomes
  ☆41Updated 12 years ago
• jonathancrabtree / Circleator
  Flexible circular visualization of genome-associated data with BioPerl and SVG.
  ☆47Updated 6 years ago
• richardmleggett / acc2tax
  Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings
  ☆14Updated last year
• eclarke / komplexity
  A method of assessing sequence complexity based on kmer frequencies
  ☆33Updated 7 years ago
• biocore / micronota
  annotation pipeline for microbial genomes and metagenomes
  ☆18Updated 7 years ago
• merenlab / reads-for-assembly
  Simulate metagenomic short reads from one or more populations.
  ☆26Updated 10 months ago
• nickloman / poredb
  ☆18Updated 8 years ago
• sanger-pathogens / pymummer
  Python3 module for running MUMmer and reading the output
  ☆33Updated 8 months ago
• centre-for-microbiome-research / GroopM
  Metagenomic binning suite
  ☆29Updated 3 years ago
• jts / nanocorrect
  Experimental pipeline for correcting nanopore reads
  ☆39Updated 8 years ago