A toolbox for comparative genomics.
☆110May 26, 2021Updated 5 years ago
Alternatives and similar repositories for CompareM
Users that are interested in CompareM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 9 months ago
- A toolkit for prokaryotic comparative genomics☆53Feb 23, 2026Updated 8 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆38Jul 21, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆413Mar 2, 2026Updated 8 months ago
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆271Oct 14, 2026Updated 3 weeks ago
- Read alignment statistics for metagenomics☆411Updated this week
- Fast Whole-Genome Similarity (ANI) Estimation☆486Sep 14, 2026Updated last month
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆629Oct 20, 2026Updated 2 weeks ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆98May 11, 2026Updated 5 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆303Nov 28, 2024Updated last year
- Build a partitioned pangenome graph from microbial genomes☆313Oct 30, 2026Updated last week
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆172Jun 10, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Systematic search of all known anti-phage systems.☆188Sep 1, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆344Oct 29, 2026Updated last week
- Development version of Easyfig☆110Dec 21, 2023Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆81Sep 20, 2023Updated 3 years ago
- A user-friendly workflow for phylogenomics☆235Sep 28, 2026Updated last month
- A toolbox for working with genome trees.☆10May 20, 2026Updated 5 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆483Oct 9, 2026Updated 3 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆147Oct 9, 2023Updated 3 years ago
- A tool to circularize genome assemblies☆258Apr 6, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Virus Identification By iteRative ANnoTation☆209Apr 15, 2024Updated 2 years ago
- Microbial RNA annotation☆321Apr 12, 2026Updated 6 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆29Aug 3, 2026Updated 3 months ago
- Rapid large-scale prokaryote pan genome analysis☆381Nov 3, 2025Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆236Mar 24, 2026Updated 7 months ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- A tool for identifying phylogenetic marker genes in Nucleocytoviricota (giant viruses) and generating concatenated alignments.☆13Feb 17, 2024Updated 2 years ago
- Rapid comparison and dereplication of genomes☆361Oct 9, 2026Updated 3 weeks ago
- DDBJ Fast Annotation and Submission Tool☆86Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆133Jul 9, 2023Updated 3 years ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆102Oct 3, 2020Updated 6 years ago
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- Pan-genome wide association studies☆229May 29, 2024Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆694Oct 11, 2026Updated 3 weeks ago
- ATLAS - Three commands to start analyzing your metagenome data☆405May 28, 2026Updated 5 months ago
- Gene cluster comparison figure generator☆662Updated this week