Alternatives and similar repositories for nano-rave

Users that are interested in nano-rave are comparing it to the libraries listed below

• merlyescalona / yagcloser

  View on GitHub
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆12Nov 6, 2025Updated 3 months ago
• marschall-lab / strand-seq-graph-phasing

  View on GitHub
  ☆13May 27, 2025Updated 8 months ago
• Minimap2onGPU / mm2-gb

  View on GitHub
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆23Sep 12, 2025Updated 5 months ago
• mritchielab / GlimmaV2

  View on GitHub
  interactive plots for differential expression analysis
  ☆34Jun 19, 2025Updated 7 months ago
• RacconC / gtftools

  View on GitHub
  ☆16May 7, 2023Updated 2 years ago
• JasonAHendry / multiply

  View on GitHub
  Multiplex PCR design, in silico
  ☆19Mar 4, 2025Updated 11 months ago
• Psy-Fer / blue-crab

  View on GitHub
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆46Feb 3, 2026Updated last week
• ngs-docs / 2023-snakemake-book-draft

  View on GitHub
  A DRAFT, early stage book on snakemake.
  ☆22Nov 1, 2023Updated 2 years ago
• malariagen / pipelines

  View on GitHub
  Pipelines for processing malaria parasite and mosquito genome sequence data.
  ☆14Nov 2, 2024Updated last year
• nanoporegenomics / napu_wf

  View on GitHub
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated this week
• LoadStar822 / Chimera

  View on GitHub
  Chimera: A Versatile Metagenomic Classification Tool
  ☆20Feb 1, 2026Updated 2 weeks ago
• HKU-BAL / MegaPath-Nano

  View on GitHub
  MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…
  ☆13Jul 2, 2022Updated 3 years ago
• dolphinnext / dolphinnext-tutorial

  View on GitHub
  DolphinNext Tutorial documents
  ☆16Jul 5, 2021Updated 4 years ago
• phiweger / ideel

  View on GitHub
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Jun 26, 2018Updated 7 years ago
• bioinform / ecTMB

  View on GitHub
  ☆18Aug 22, 2021Updated 4 years ago
• bioinf-jku / panelcn.mops

  View on GitHub
  CNV detection tool for targeted NGS panel data
  ☆16Feb 28, 2022Updated 3 years ago
• miRTop / mirtop

  View on GitHub
  command lines tool to annotate miRNAs with a standard mirna/isomir naming
  ☆19Apr 24, 2025Updated 9 months ago
• gjun / muCNV

  View on GitHub
  ☆20Nov 30, 2023Updated 2 years ago
• nygenome / Lancet2

  View on GitHub
  v2.x of the microassembly based somatic variant caller
  ☆23Jul 16, 2025Updated 6 months ago
• junjunlab / GetTransTool

  View on GitHub
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆21Mar 25, 2022Updated 3 years ago
• BonsonW / slow5curl

  View on GitHub
  A library and tool for accessing remote BLOW5 files.
  ☆24Feb 5, 2026Updated last week
• HKU-BAL / SENSV

  View on GitHub
  A tool to detect structural variant
  ☆17Mar 27, 2023Updated 2 years ago
• dsarov / SPANDx

  View on GitHub
  SPANDx - Comparative genomics for next-generation haploid sequence data
  ☆22Sep 25, 2025Updated 4 months ago
• schatzlab / appliedgenomics2022

  View on GitHub
  Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomics
  ☆22Dec 8, 2022Updated 3 years ago
• ablab / metaGT

  View on GitHub
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆20Mar 3, 2023Updated 2 years ago
• wangyibin / CPhasing

  View on GitHub
  C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
  ☆87Jan 25, 2026Updated 3 weeks ago
• CFSAN-Biostatistics / snp-pipeline

  View on GitHub
  SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…
  ☆66May 5, 2023Updated 2 years ago
• althonos / pyfastani

  View on GitHub
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆24Oct 15, 2025Updated 4 months ago
• TrinityCTAT / CTAT-LR-fusion

  View on GitHub
  fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
  ☆24Feb 4, 2026Updated last week
• Ivarz / Conifer

  View on GitHub
  Calculate confidence scores from Kraken2 output
  ☆23Feb 18, 2024Updated last year
• MatthiasLienhard / isotools

  View on GitHub
  IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.
  ☆27Oct 6, 2023Updated 2 years ago
• cmdcolin / mafviewer

  View on GitHub
  A JBrowse 1 plugin to view multiple alignment format (MAF) files
  ☆27Oct 25, 2023Updated 2 years ago
• vierstralab / genome-tools

  View on GitHub
  Processing and plotting tools for genomics data
  ☆22Jan 31, 2026Updated 2 weeks ago
• dcjones / polee

  View on GitHub
  Analyzing RNA-Seq with approximate likelihood
  ☆26Dec 13, 2020Updated 5 years ago
• smortezah / smashpp

  View on GitHub
  Find and visualize rearrangements in DNA sequences
  ☆54Dec 1, 2025Updated 2 months ago
• yottoo / JuliaCommunity

  View on GitHub
  A julia wrapper for Leiden algorithm to discover and plot the communities of a network.
  ☆10Jun 10, 2021Updated 4 years ago
• metagenlab / MeSS

  View on GitHub
  Snakemake pipeline for simulating shotgun metagenomic samples
  ☆29Sep 4, 2025Updated 5 months ago
• shimlab / BLAZE

  View on GitHub
  SingleCell Nanopore sequencing data analysis
  ☆63May 30, 2025Updated 8 months ago
• DessimozLab / OMAnnotator

  View on GitHub
  Consensus genome annotation using OMA
  ☆31Jan 14, 2026Updated last month