sanger-pathogens / nano-raveLinks
Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with Guppy).
☆13Updated last year
Alternatives and similar repositories for nano-rave
Users that are interested in nano-rave are comparing it to the libraries listed below
Sorting:
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 5 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- finding conserved regions in highly diverse genomes☆15Updated 7 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A simple toolkit for manipulating nanopore signal data☆19Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- ☆19Updated 2 months ago
- ☆29Updated 4 years ago
- ☆14Updated last year
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Consensus genome annotation using OMA☆31Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 2 weeks ago
- Implementation of ToL genome assembly workflows☆24Updated last week
- Read contamination removal☆25Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 4 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 9 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22Updated 8 months ago
- ☆29Updated 2 years ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 8 months ago
- ☆15Updated 6 years ago
- ☆29Updated 3 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 4 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- ☆25Updated 4 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated 3 weeks ago