Alternatives and similar repositories for ISB-CGC-pipelines

Users that are interested in ISB-CGC-pipelines are comparing it to the libraries listed below

• seandavi / ci4cc-informatics-resources
  Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…
  ☆22Updated 6 years ago
• googlegenomics / pipelines-api-examples
  Examples for the Google Genomics Pipelines API.
  ☆50Updated 7 years ago
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆13Updated 3 years ago
• seandavi / ngCGH
  Tools for producing pseudo-cgh of next-generation sequencing data
  ☆18Updated 8 years ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• sentisci / fheatmap
  R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…
  ☆11Updated 9 years ago
• nmdp-bioinformatics / dash
  Data Standards Hackathon for NGS based typing.
  ☆14Updated 5 months ago
• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆32Updated 5 months ago
• bartongroup / AlmostSignificant
  A server for maintaining high-throughput sequencing QC data
  ☆13Updated this week
• mikessh / oncofuse
  Predicting oncogenic potential of gene fusions
  ☆12Updated 9 years ago
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆25Updated 11 months ago
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆18Updated 6 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 3 years ago
• RahmanTeam / OpEx
  The OpEx (Optimised Exome) pipeline
  ☆9Updated 6 years ago
• opentargets-archive / genetics-app
  Open Targets Genetics UI
  ☆15Updated 6 months ago
• biocompute-objects / BCO_Documentation
  Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
  ☆17Updated last year
• gersteinlab / aloft
  ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…
  ☆19Updated 5 years ago
• TheJacksonLaboratory / CloudNeo
  CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
  ☆19Updated 6 years ago
• griffithlab / igvnav
  ☆15Updated 7 years ago
• sbg / smart-variant-filtering
  ☆29Updated 4 years ago
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 7 years ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆18Updated 8 years ago
• bystrogenomics / bystro
  Natural Language Search and Analysis of High Dimensional Genomic Data
  ☆47Updated 2 weeks ago
• broadinstitute / seqr-loading-pipelines
  hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
  ☆23Updated last week
• raphael-group / magi
  A web application from the Raphael Lab for mutation annotation and genome interpretation.
  ☆20Updated 7 years ago
• datarail / gr_metrics
  ☆15Updated 2 years ago
• yiq / SubcloneSeeker
  Computational Framework to reconstructing tumor clone structures
  ☆15Updated 4 years ago
• DKFZ-ODCF / DKFZBiasFilter
  ☆12Updated 3 years ago
• statgenetics / seqspark
  SEQSpark documentation
  ☆18Updated 4 years ago