isb-cgc / ISB-CGC-pipelines
Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.
☆12Updated 8 years ago
Alternatives and similar repositories for ISB-CGC-pipelines:
Users that are interested in ISB-CGC-pipelines are comparing it to the libraries listed below
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 6 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated last year
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- ☆12Updated 3 years ago
- Tools for producing pseudo-cgh of next-generation sequencing data☆17Updated 8 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆24Updated 7 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 8 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- Penetrance estimates; frequency and distribution of secondary findings for the ACMG-59 gene panel☆1Updated 7 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Reproducible Workflows, curated at the Fred Hutch☆12Updated 5 years ago
- Predicting oncogenic potential of gene fusions☆12Updated 9 years ago
- Gene lists related to cancer immunotherapy☆13Updated 6 months ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆20Updated 3 years ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 5 years ago
- NExt generation Analysis Toolbox☆14Updated 9 years ago
- Class materials for the NIH HPC snakemake class☆16Updated 6 months ago
- ☆29Updated 4 years ago
- ☆12Updated 2 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- ☆15Updated 7 years ago
- Data Standards Hackathon for NGS based typing.☆13Updated last month
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Haplotype-based somatic genome simulator☆10Updated 7 years ago
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Updated 2 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago