isb-cgc / ISB-CGC-pipelinesLinks
Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.
☆12Updated 8 years ago
Alternatives and similar repositories for ISB-CGC-pipelines
Users that are interested in ISB-CGC-pipelines are comparing it to the libraries listed below
Sorting:
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 7 years ago
- Python client for GA4GH htsget protocol☆15Updated 3 years ago
- Examples for the Google Genomics Pipelines API.☆50Updated 7 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Updated last year
- Tools for producing pseudo-cgh of next-generation sequencing data☆18Updated 9 years ago
- Reproducible Workflows, curated at the Fred Hutch☆12Updated 6 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Updated 7 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated this week
- A server for maintaining high-throughput sequencing QC data☆13Updated 4 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 3 months ago
- ☆12Updated 4 years ago
- Easily run WDL workflows on GCP☆14Updated 4 years ago
- Predicting oncogenic potential of gene fusions☆12Updated 9 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- ☆29Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- ☆12Updated 8 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆15Updated 2 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Updated last year
- WDL plugin for pytest☆48Updated 2 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago