Alternatives and similar repositories for BindingGYM

Users that are interested in BindingGYM are comparing it to the libraries listed below

• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 9 months ago
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆32Updated 3 weeks ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 11 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆49Updated 9 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆43Updated 8 months ago
• HannesStark / CodonMPNN
  ☆28Updated 8 months ago
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆27Updated last year
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆80Updated last year
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• Bitbol-Lab / rag-esm
  RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
  ☆23Updated last week
• A4Bio / FoldToken_open
  ☆21Updated 9 months ago
• PKUliujl / GeoSeqBuilder
  ☆28Updated 6 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 3 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• alexechu / protpardelle
  ☆65Updated last year
• JoreyYan / Originflow
  ☆16Updated 3 months ago
• ProteinDesignLab / protein_shapes
  Metrics to evaluate distributional coverage of generative models of protein structures.
  ☆15Updated 2 weeks ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆40Updated 4 months ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆77Updated last year
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆80Updated 2 weeks ago
• danny305 / StabilityOracle
  ☆27Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆103Updated 3 weeks ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆73Updated 3 months ago
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆67Updated last month
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆54Updated 9 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated last week
• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 5 months ago