luwei0917 / BindingGYMLinks
☆34Updated 4 months ago
Alternatives and similar repositories for BindingGYM
Users that are interested in BindingGYM are comparing it to the libraries listed below
Sorting:
- Code for humanization of antibody and nanobody☆65Updated 3 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 6 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆34Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆40Updated 4 months ago
- ☆39Updated last year
- ☆29Updated 11 months ago
- ☆61Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆46Updated last year
- workflow used to prepare PPB-Affinity database☆28Updated last year
- ☆22Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- ☆30Updated 10 months ago
- ☆16Updated last week
- ☆17Updated 11 months ago
- ☆65Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆127Updated 3 weeks ago
- Profluent-E1 family of Protein Encoder Models☆93Updated 2 weeks ago
- Extension of ThermoMPNN for double mutant predictions☆49Updated 2 months ago
- ☆13Updated last year
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆25Updated 3 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆89Updated 5 months ago
- ☆29Updated 2 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 8 months ago
- Aligning protein generative models with experimental fitness☆113Updated last month
- ☆19Updated 2 weeks ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆40Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆58Updated last month