Alternatives and similar repositories for iNNterfaceDesign

Users that are interested in iNNterfaceDesign are comparing it to the libraries listed below

• Furman-Lab / PatchMAN
  ☆27Updated last week
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆21Updated 5 months ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 4 years ago
• cl666666 / GVP-MSA
  ☆13Updated 2 years ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆18Updated 9 months ago
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆16Updated 2 years ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆21Updated 6 years ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆33Updated 2 years ago
• KhondamirRustamov / FoldCraft
  Fold Conditioned protein design pipeline based on AF2Multimer Hallucination
  ☆46Updated 2 weeks ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆25Updated last year
• sokrypton / roscon2024
  Tutorial files
  ☆12Updated last year
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆12Updated 4 years ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 7 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆25Updated 5 years ago
• ohuelab / ColabDesign-cyclic-binder
  ☆37Updated 2 years ago
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆22Updated 9 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆35Updated last year
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 3 months ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆34Updated 2 years ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated 2 years ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated last month
• RosettaCommons / FvHallucinator
  ☆28Updated 3 years ago
• Lailabcode / DeepSCM
  A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…
  ☆28Updated 3 years ago
• masoudk / AsiteDesign
  ☆13Updated 2 years ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆41Updated 8 months ago
• ComputArtCMCG / ProBID-NET
  ☆15Updated 6 months ago
• PKUliujl / GeoSeqBuilder
  ☆31Updated 10 months ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆28Updated 2 years ago
• MinchaoFang / HalluDesign
  HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…
  ☆46Updated this week
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆25Updated 9 months ago