Alternatives and similar repositories for iNNterfaceDesign:

Users that are interested in iNNterfaceDesign are comparing it to the libraries listed below

• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated last month
• ohuelab / ColabDesign-cyclic-binder
  ☆31Updated last year
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 7 months ago
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 3 years ago
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆23Updated 7 months ago
• tommyhuangthu / EvoEF2
  a fast and accurate physical energy function extended from EvoEF for protein sequence design
  ☆25Updated last year
• Furman-Lab / PatchMAN
  ☆25Updated 6 months ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆19Updated 5 years ago
• PKUliujl / GeoSeqBuilder
  ☆25Updated 2 weeks ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆21Updated last year
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 6 months ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆32Updated 8 months ago
• RosettaCommons / FvHallucinator
  ☆26Updated 2 years ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆34Updated 2 years ago
• CarbonMatrixLab / carbonnovo
  Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
  ☆16Updated 3 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆38Updated last week
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆31Updated 3 months ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆22Updated last year
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆20Updated last year
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆15Updated last year
• LPDI-EPFL / RosettaSurf
  ☆13Updated 3 years ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆41Updated 2 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆26Updated 10 months ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated this week
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆19Updated 5 years ago
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆21Updated last year
• Tessier-Lab-UMich / Emi_Pareto_Opt_ML
  ☆20Updated 2 years ago