The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.
☆183Jun 17, 2023Updated 2 years ago
Alternatives and similar repositories for PiFold
Users that are interested in PiFold are comparing it to the libraries listed below
Sorting:
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆200Sep 18, 2024Updated last year
- The official implementation of the ICML'24 paper RFold: Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching P…☆89Jul 20, 2024Updated last year
- The official implementation of the ICASSP'2023 paper Global-context aware generative protein design.☆27Feb 21, 2023Updated 3 years ago
- ☆212Sep 24, 2024Updated last year
- The official implementation of the ICLR'24 paper RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-base…☆50Aug 22, 2024Updated last year
- Generative Models for Graph-Based Protein Design☆284Dec 24, 2020Updated 5 years ago
- Official implementation of the paper "DiffSDS: A Language Diffusion Model for Protein Backbone Inpainting under Geometric Conditions and …☆14Jun 25, 2023Updated 2 years ago
- ☆118Jan 3, 2026Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Feb 2, 2026Updated 3 weeks ago
- Database of Interacting Protein Structures (DIPS)☆104Jan 26, 2024Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆125Feb 26, 2025Updated last year
- ☆134Jun 3, 2025Updated 8 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆414Jul 3, 2023Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆314Jul 19, 2024Updated last year
- ☆96Oct 15, 2024Updated last year
- ☆209Apr 21, 2025Updated 10 months ago
- Official repository for the ProteinGym benchmarks☆389Jan 12, 2026Updated last month
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆315Jun 13, 2025Updated 8 months ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆353Jun 29, 2023Updated 2 years ago
- The official implementation of the CVPR'2022 paper Hyperspherical Consistency Regularization.☆29Jun 22, 2022Updated 3 years ago
- List of papers about Proteins Design using Deep Learning☆1,886Updated this week
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆70Jul 19, 2024Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- Code for ColabDock paper☆151May 1, 2025Updated 9 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆162Aug 24, 2023Updated 2 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆375Jun 3, 2024Updated last year
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆405Sep 3, 2023Updated 2 years ago
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆91Dec 29, 2023Updated 2 years ago
- Code for the ProteinMPNN paper☆1,627Aug 14, 2024Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Mar 7, 2024Updated last year
- ☆13May 25, 2022Updated 3 years ago
- Protein hallucination and inpainting with RoseTTAFold☆279Mar 30, 2023Updated 2 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆82May 16, 2025Updated 9 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆103Apr 7, 2023Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆134Nov 11, 2025Updated 3 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆564Dec 12, 2023Updated 2 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆128Nov 19, 2025Updated 3 months ago