☆15May 29, 2024Updated last year
Alternatives and similar repositories for AlphaFold3_PPI
Users that are interested in AlphaFold3_PPI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆23Oct 31, 2025Updated 6 months ago
- ☆15Jun 3, 2025Updated 11 months ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆126Oct 24, 2025Updated 6 months ago
- A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…☆27Jul 15, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- ☆13Dec 5, 2024Updated last year
- ☆118Jan 3, 2026Updated 4 months ago
- ☆12May 16, 2020Updated 5 years ago
- Pharmacophore Elucidation with Convolutional Neural Networks and Reinforcement Learning☆17Apr 7, 2025Updated last year
- ☆33Aug 12, 2024Updated last year
- rid☆25Aug 15, 2021Updated 4 years ago
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆20May 9, 2024Updated last year
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆17Apr 27, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Geometry-aware protein binding site predictor☆28Aug 29, 2024Updated last year
- Code of "Instruction Multi-Constraint Molecular Generation Using a Teacher-Student Large Language Model"☆14Jul 8, 2025Updated 9 months ago
- Disordered protein ensemble prediction☆14Apr 2, 2026Updated last month
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 11 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆103May 25, 2025Updated 11 months ago
- Segmentation of nucleic acid binding interface on protein surface with geometric deep learning☆14May 3, 2023Updated 3 years ago
- init commit☆15Oct 31, 2023Updated 2 years ago
- Application of deep generative model discovers novel and diverse functional peptides against microbial resistance☆11Dec 22, 2022Updated 3 years ago
- ☆12Oct 9, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Synthetic Accessibility via Fragment Assembly Generation☆23Apr 18, 2026Updated 2 weeks ago
- ☆13Apr 1, 2026Updated last month
- ☆35Mar 9, 2026Updated last month
- This repository implements Gibbs sampling with Graph-based Smoothing☆42May 29, 2024Updated last year
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆18May 2, 2021Updated 5 years ago
- PairMap: An Intermediate Insertion Approach for Improving the Accuracy of Relative Free Energy Perturbation Calculations for Distant Comp…☆16Mar 18, 2026Updated last month
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- ☆20Aug 5, 2025Updated 9 months ago
- ☆13Feb 20, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆26Oct 8, 2024Updated last year
- ☆213Sep 24, 2024Updated last year
- Rank binders by structure modeling☆16Apr 10, 2026Updated 3 weeks ago
- ☆12Jun 16, 2023Updated 2 years ago
- Free Parametrization for Small Molecules☆53Feb 18, 2026Updated 2 months ago
- PyChem-Pro: a molecular viewer☆100Updated this week
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago