Alternatives and similar repositories for AlphaFold3_PPI:

Users that are interested in AlphaFold3_PPI are comparing it to the libraries listed below

• LLNL / CRPCA
  Computationally Restoring the Potency of a Clinical Antibody
  ☆17Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆21Updated last year
• ComputArtCMCG / ProBID-NET
  ☆14Updated 5 months ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 3 weeks ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆26Updated last month
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆15Updated 2 months ago
• bzho3923 / ProtLGN
  ☆29Updated 7 months ago
• WeiLab-Biology / DeepProSite
  ☆31Updated last year
• PKUliujl / GeoSeqBuilder
  ☆25Updated last month
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆16Updated 6 months ago
• jkwang93 / AMP-Designer
  A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery
  ☆15Updated 4 months ago
• alepandini / DyNoPy
  DyNoPy
  ☆11Updated 6 months ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 8 months ago
• Furman-Lab / PatchMAN
  ☆25Updated 7 months ago
• anirudhvenk / antibody-dpo
  ☆17Updated 2 months ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆21Updated last year
• skalyaanamoorthy / PSLMs
  ☆18Updated 4 months ago
• protddg-bench / protddg-bench
  Scoring methods for predicting the DDG upon protein mutation
  ☆14Updated 2 years ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆26Updated last year
• Gonglab-THU / GeoStab
  ☆30Updated 4 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆31Updated 4 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆42Updated 3 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆31Updated last year
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 3 years ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆30Updated 7 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆21Updated 5 years ago