Alternatives and similar repositories for SCUBA-D

Users that are interested in SCUBA-D are comparing it to the libraries listed below

• Kuhlman-Lab / evopro
  ☆94Updated 3 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆71Updated 5 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆93Updated last month
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• bene837 / af2seq
  ☆47Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆53Updated 3 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆70Updated 7 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆106Updated last week
• danny305 / StabilityOracle
  ☆30Updated 3 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆133Updated 2 months ago
• JoreyYan / Originflow
  ☆19Updated 2 months ago
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆64Updated last month
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆42Updated 6 months ago
• CarbonMatrixLab / carbonnovo
  Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
  ☆25Updated last year
• Profluent-AI / E1
  Profluent-E1 family of Protein Encoder Models
  ☆100Updated 2 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆60Updated last year
• ChenPy00 / PPB-Affinity
  Baseline model for PPB-Affinity benchmark data
  ☆34Updated 8 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆51Updated last week
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆91Updated 7 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆72Updated last year
• zhanghaicang / carbonmatrix_public
  ☆118Updated last month
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆28Updated last year
• Jfeldman34 / AF3Complex
  ☆53Updated 7 months ago
• decodermu / GPD
  Graphormer Based Protein Sequence Design
  ☆26Updated 2 years ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆89Updated 6 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• Mingchenchen / PPIFlow
  de novo design of high affinity biological binders
  ☆114Updated last week
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆47Updated 3 months ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆38Updated last month
• PKUliujl / GeoSeqBuilder
  ☆32Updated last year