liuyf020419 / SCUBA-DLinks
☆61Updated last year
Alternatives and similar repositories for SCUBA-D
Users that are interested in SCUBA-D are comparing it to the libraries listed below
Sorting:
- Code for humanization of antibody and nanobody☆58Updated last month
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆66Updated 3 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆66Updated 3 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆122Updated 4 months ago
- ☆44Updated last year
- Extension of ThermoMPNN for double mutant predictions☆43Updated 2 weeks ago
- code for IDR binding paper 2025☆56Updated 8 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆56Updated 5 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆74Updated 2 months ago
- Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model☆24Updated 11 months ago
- Official repository of GENzyme☆54Updated 10 months ago
- Efficient manipulation of protein structures in Python☆58Updated 3 weeks ago
- ☆29Updated 2 weeks ago
- ☆28Updated 8 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆34Updated last month
- ☆116Updated 4 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆103Updated 2 weeks ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆70Updated this week
- ☆47Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆82Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆40Updated 6 months ago
- Baseline model for PPB-Affinity benchmark data☆30Updated 5 months ago
- ☆71Updated 7 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆45Updated 11 months ago
- bakerlab pymol scripts☆25Updated 5 years ago
- workflow used to prepare PPB-Affinity database☆28Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆51Updated 3 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆86Updated 4 months ago
- ☆72Updated 4 months ago