Alternatives and similar repositories for ESM-AA

Users that are interested in ESM-AA are comparing it to the libraries listed below

• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆105Updated 2 months ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆57Updated 10 months ago
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆83Updated last year
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆95Updated 2 years ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆59Updated last year
• levinthal / Pallatom
  ☆92Updated 6 months ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆95Updated last year
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆35Updated last year
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆46Updated last year
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆75Updated 10 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆62Updated last year
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆90Updated 5 months ago
• bytedance / ConfDiff
  Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
  ☆54Updated 8 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆33Updated 5 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆49Updated 5 months ago
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆76Updated 4 months ago
• JocelynSong / SurfPro
  ☆26Updated last month
• wengong-jin / abdockgen
  ☆106Updated 2 years ago
• tiantz17 / PocketAnchor
  Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction
  ☆33Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆101Updated 2 months ago
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆58Updated last week
• wengong-jin / DSMBind
  ☆88Updated 7 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆30Updated 7 months ago
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆75Updated last year
• Gonglab-THU / GeoStab
  ☆32Updated 6 months ago
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆33Updated 2 months ago
• THUNLP-MT / PepGLAD
  Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)
  ☆70Updated last month
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆71Updated last week
• WeiLab-Biology / DeepProSite
  ☆32Updated last year