zhengkangjie / ESM-AA
☆59Updated 7 months ago
Alternatives and similar repositories for ESM-AA:
Users that are interested in ESM-AA are comparing it to the libraries listed below
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆99Updated 9 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆54Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 7 months ago
- ☆105Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆47Updated last week
- ☆73Updated 3 months ago
- Official repository of EnzymeFlow☆74Updated last month
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆63Updated 3 months ago
- ☆80Updated 3 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆73Updated 7 months ago
- Structure-conditioned masked language modeling for protein sequence design☆61Updated 11 months ago
- Official repository of GENzyme☆40Updated 2 months ago
- ☆66Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆40Updated last year
- Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.☆73Updated 3 weeks ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆25Updated last year
- Official repository of ReactZyme☆26Updated 3 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆37Updated last week
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆91Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆23Updated last month
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆57Updated 3 months ago
- Pro-FSFP: Few-Shot Protein Fitness Prediction☆73Updated 3 weeks ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆35Updated 2 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆31Updated last year
- Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction☆30Updated last year
- ☆30Updated this week
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆37Updated 7 months ago
- [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening☆77Updated 9 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 8 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆68Updated 10 months ago