zhengkangjie / ESM-AAView external linksLinks
☆78Feb 11, 2025Updated last year
Alternatives and similar repositories for ESM-AA
Users that are interested in ESM-AA are comparing it to the libraries listed below
Sorting:
- ☆118Jan 3, 2026Updated last month
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆563Nov 19, 2025Updated 2 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆302Jul 25, 2025Updated 6 months ago
- ☆212Sep 24, 2024Updated last year
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- ☆25Oct 8, 2024Updated last year
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Nov 5, 2025Updated 3 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated last year
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆353Jun 29, 2023Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- Benchmarking code accompanying the release of `bioemu`☆54Nov 25, 2025Updated 2 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆167Feb 6, 2026Updated last week
- Official repository of GENzyme☆61Nov 29, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆70Jan 31, 2024Updated 2 years ago
- ☆33Aug 12, 2024Updated last year
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆43Jul 11, 2025Updated 7 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆326Oct 28, 2024Updated last year
- ☆27Feb 10, 2024Updated 2 years ago
- ☆53Jun 25, 2025Updated 7 months ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆663Jan 15, 2026Updated last month
- The first 100B protein language model from biomap☆18Mar 17, 2025Updated 11 months ago
- Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein In…☆28Feb 8, 2025Updated last year
- Comprehensive benchmarking of protein-ligand structure prediction methods. (Nature Machine Intelligence)☆207Jan 6, 2026Updated last month
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆192Updated this week
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆147May 29, 2025Updated 8 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆265Apr 27, 2025Updated 9 months ago
- The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"☆74Aug 23, 2024Updated last year
- ☆40Jul 28, 2025Updated 6 months ago
- Fast protein backbone generation with SE(3) flow matching.☆312Jul 19, 2024Updated last year
- ☆31Dec 12, 2024Updated last year
- ☆27Feb 8, 2026Updated last week
- Sidechain conditioning and modeling for full-atom protein sequence design☆134Nov 11, 2025Updated 3 months ago
- Fragment binding prediction with ColabFold☆41Nov 9, 2025Updated 3 months ago
- ☆21Oct 22, 2024Updated last year
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆104May 25, 2025Updated 8 months ago
- Official repository of EnzymeFlow☆98Dec 7, 2024Updated last year
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆44Aug 2, 2025Updated 6 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆117Oct 24, 2025Updated 3 months ago
- ☆92Dec 30, 2025Updated last month