Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protein entities.
☆48Nov 4, 2025Updated 4 months ago
Alternatives and similar repositories for CARBonAra
Users that are interested in CARBonAra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆156Oct 11, 2023Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- ☆40Sep 17, 2024Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆73Jul 2, 2025Updated 8 months ago
- ☆117Jan 3, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆31Oct 7, 2025Updated 5 months ago
- ☆33Aug 12, 2024Updated last year
- ☆11May 16, 2020Updated 5 years ago
- Physical energy function for protein sequence design☆38May 6, 2023Updated 2 years ago
- ☆47Sep 16, 2024Updated last year
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆43Jun 17, 2025Updated 9 months ago
- VenusFSFP: Few-Shot Protein Fitness Prediction☆111Nov 18, 2025Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Active Learning-Assisted Directed Evolution for Protein Engineering☆81Oct 24, 2025Updated 5 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 4 months ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆63Oct 28, 2025Updated 5 months ago
- ☆66Apr 8, 2025Updated 11 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆99Dec 10, 2025Updated 3 months ago
- ☆562Feb 6, 2025Updated last year
- RXN for biochemical reactions☆74Oct 18, 2022Updated 3 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆237Updated this week
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆15Oct 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆62Apr 9, 2024Updated last year
- PLMFit platform for TL on PLMs☆20Aug 13, 2025Updated 7 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆122May 27, 2025Updated 10 months ago
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- Binding pocket optimization based on force fields and docking scoring functions☆37Mar 19, 2025Updated last year
- Deep reinforcement learning for protein complex modeling☆11May 28, 2022Updated 3 years ago
- Public RFDiffusionAA repo☆473Jul 9, 2024Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆118Jan 28, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 7 months ago
- Source code for the reproduction of RibbonFold paper.☆11May 10, 2025Updated 10 months ago
- Bilingual Language Model for Protein Sequence and Structure☆306Mar 6, 2026Updated 3 weeks ago
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- ☆17May 15, 2025Updated 10 months ago
- Official repository of EnzymeFlow☆100Dec 7, 2024Updated last year