Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protein entities.
☆48Nov 4, 2025Updated 4 months ago
Alternatives and similar repositories for CARBonAra
Users that are interested in CARBonAra are comparing it to the libraries listed below
Sorting:
- ☆40Sep 17, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- ☆30Oct 7, 2025Updated 5 months ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆156Oct 11, 2023Updated 2 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆80Oct 24, 2025Updated 4 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆73Jul 2, 2025Updated 8 months ago
- ☆33Aug 12, 2024Updated last year
- ☆117Jan 3, 2026Updated 2 months ago
- ☆11May 16, 2020Updated 5 years ago
- ☆66Apr 8, 2025Updated 11 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Nov 5, 2025Updated 4 months ago
- ☆47Sep 16, 2024Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 2 weeks ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- VenusFSFP: Few-Shot Protein Fitness Prediction☆108Nov 18, 2025Updated 3 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆98Dec 10, 2025Updated 2 months ago
- Deep reinforcement learning for protein complex modeling☆11May 28, 2022Updated 3 years ago
- Physical energy function for protein sequence design☆37May 6, 2023Updated 2 years ago
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆63Oct 28, 2025Updated 4 months ago
- ☆551Feb 6, 2025Updated last year
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆14Oct 17, 2024Updated last year
- ☆61Apr 9, 2024Updated last year
- ☆94Dec 30, 2025Updated 2 months ago
- Binding pocket optimization based on force fields and docking scoring functions☆37Mar 19, 2025Updated 11 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆229Aug 7, 2025Updated 7 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆87Jun 23, 2024Updated last year
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆41Jun 17, 2025Updated 8 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆121May 27, 2025Updated 9 months ago
- Fast, gene-specific joint humanisation of antibody heavy and light chains.☆18Nov 11, 2025Updated 3 months ago
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- ☆74Feb 13, 2026Updated 3 weeks ago
- ☆17May 15, 2025Updated 9 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆115Jan 28, 2026Updated last month
- ☆20Oct 4, 2022Updated 3 years ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last week
- Official repository of EnzymeFlow☆99Dec 7, 2024Updated last year
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆75Feb 28, 2026Updated last week
- Public RFDiffusionAA repo☆467Jul 9, 2024Updated last year