LBM-EPFL / CARBonAra
Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protein entities.
☆39Updated 5 months ago
Alternatives and similar repositories for CARBonAra:
Users that are interested in CARBonAra are comparing it to the libraries listed below
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆56Updated 2 months ago
- ☆43Updated 7 months ago
- ☆66Updated last month
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆46Updated 4 months ago
- ☆76Updated last month
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆54Updated 2 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆58Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆50Updated 5 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated 11 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆32Updated 9 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆29Updated 10 months ago
- ☆49Updated last month
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆57Updated 2 weeks ago
- Code for humanization of antibody and nanobody☆39Updated 5 months ago
- ☆23Updated 6 months ago
- Extension of ThermoMPNN for double mutant predictions☆32Updated last month
- ☆18Updated 6 months ago
- Official repository of GENzyme☆49Updated 5 months ago
- ☆34Updated 7 months ago
- ☆65Updated 2 months ago
- Efficient manipulation of protein structures in Python☆53Updated 6 months ago
- ☆23Updated last month
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆19Updated last month
- scripts to find PBD structures for cancer driver proteins☆31Updated 2 months ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆43Updated 3 weeks ago
- ☆26Updated 3 months ago
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆54Updated last year
- Modelling protein conformational landscape with Alphafold☆47Updated 2 weeks ago
- Small_molecule_binder_design_use_pseudocycles☆18Updated 5 months ago