LBM-EPFL / CARBonAra
Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protein entities.
☆34Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for CARBonAra
- ☆48Updated 9 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆25Updated 5 months ago
- ☆38Updated 2 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆23Updated 3 months ago
- ☆45Updated last month
- ☆70Updated 7 months ago
- ☆20Updated last month
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆25Updated 2 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆51Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆60Updated 9 months ago
- Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder☆62Updated this week
- Code for humanization of antibody and nanobody☆23Updated 3 weeks ago
- Official repository of EnzymeFlow☆59Updated last week
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆29Updated last year
- Structure prediction of alternative protein conformations☆71Updated 2 months ago
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆48Updated 10 months ago
- ☆24Updated last month
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆37Updated 6 months ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆19Updated this week
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆33Updated 2 months ago
- ☆43Updated 7 months ago
- ☆31Updated 7 months ago
- ☆21Updated 5 months ago
- Pro-FSFP: Few-Shot Protein Fitness Prediction☆61Updated 2 months ago
- A collection of *fold* tools☆19Updated 2 years ago
- ☆42Updated 4 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆36Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆26Updated 2 weeks ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆43Updated last week
- ☆35Updated 11 months ago