Alternatives and similar repositories for _2024_cagiada_stability

Users that are interested in _2024_cagiada_stability are comparing it to the libraries listed below

• bene837 / af2seq
  ☆44Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated 3 weeks ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆45Updated 11 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆41Updated 6 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆56Updated 5 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 3 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆55Updated last month
• bwicky / oligomer_hallucination
  ☆36Updated last year
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆36Updated 3 weeks ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆58Updated last month
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆71Updated 4 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆70Updated this week
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆43Updated last month
• liuyf020419 / SCUBA-D
  ☆62Updated last year
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆51Updated 3 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated 11 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆53Updated 2 months ago
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆45Updated this week
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 8 months ago
• PKUliujl / GeoSeqBuilder
  ☆28Updated 8 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆76Updated 2 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆58Updated 2 months ago
• Bitbol-Lab / rag-esm
  RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
  ☆24Updated 2 months ago
• regeneron-mpds / propermab
  ☆37Updated 6 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• AbSciBio / igdesign
  ☆47Updated 9 months ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆31Updated last year