CarbonMatrixLab / AbXLinks
Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints
☆37Updated 5 months ago
Alternatives and similar repositories for AbX
Users that are interested in AbX are comparing it to the libraries listed below
Sorting:
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆78Updated 2 weeks ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆73Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Baseline model for PPB-Affinity benchmark data☆25Updated last month
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆61Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 7 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆55Updated 3 weeks ago
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- ☆68Updated 3 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 7 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆78Updated last year
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆39Updated last year
- protein structure generation with sparse all-atom denoising models☆32Updated 3 weeks ago
- Adapting protein language models for structure-conditioned design☆38Updated 10 months ago
- Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model☆23Updated 7 months ago
- Code for humanization of antibody and nanobody☆42Updated 6 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆37Updated 2 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- A benchmark for 3D biomolecular structure prediction models☆60Updated last month
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆94Updated last week
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆23Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆55Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆49Updated last month
- Protein Design by Machine Learning guided Directed Evolution☆43Updated 2 months ago
- ☆81Updated last week
- Official repository of EnzymeFlow☆91Updated 6 months ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆37Updated 3 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆61Updated last month
- Official repository of GENzyme☆51Updated 7 months ago