CarbonMatrixLab / AbXLinks
Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints
☆42Updated 5 months ago
Alternatives and similar repositories for AbX
Users that are interested in AbX are comparing it to the libraries listed below
Sorting:
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Code for humanization of antibody and nanobody☆65Updated 3 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆78Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- ☆71Updated 8 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆89Updated 6 months ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆42Updated last year
- Adapting protein language models for structure-conditioned design☆41Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆46Updated last month
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 6 months ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆26Updated 3 months ago
- Tool for modelling the CDRs of antibodies☆33Updated 3 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆82Updated 4 months ago
- Extension of ThermoMPNN for double mutant predictions☆49Updated 2 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆44Updated last month
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆46Updated last year
- ☆21Updated last year
- Baseline model for PPB-Affinity benchmark data☆33Updated 6 months ago
- ☆61Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- ☆23Updated 6 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 8 months ago
- Public Release of ProGen3 family of Models☆91Updated 4 months ago
- ☆46Updated last year
- protein structure generation with sparse all-atom denoising models☆50Updated 2 months ago
- ☆19Updated 2 weeks ago
- Official repository of GENzyme☆58Updated last year
- Versatile human antibody sequence design☆21Updated 6 months ago
- Official repository of EnzymeFlow☆97Updated last year