Alternatives and similar repositories for AD_regulome_analysis

Users that are interested in AD_regulome_analysis are comparing it to the libraries listed below

• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆22Updated 3 years ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 5 months ago
• dpeerlab / pdac-progression
  ☆10Updated 2 years ago
• guangchunhan / LUAD_Code
  ☆21Updated last year
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆22Updated last year
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆23Updated last year
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 8 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 9 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated 9 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆27Updated 3 years ago
• pritykinlab / ulipstic-analysis
  ☆9Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated 8 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• Coolgenome / PDAC
  ☆18Updated 5 months ago
• jeongdo801 / scNOVA
  scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
  ☆11Updated 2 years ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆27Updated 5 months ago
• RegnerM2015 / scBreast_scRNA_scATAC_2024
  Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …
  ☆17Updated 2 months ago
• mardzix / bcd_nano_CUTnTag
  ☆12Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• AllenInstitute / mouse_aging_scRNAseq
  analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain
  ☆19Updated last year
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆28Updated last year
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated 11 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆30Updated last year
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆16Updated 8 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago