pqiu / cooccurrence_clustering
☆13Updated 5 years ago
Alternatives and similar repositories for cooccurrence_clustering:
Users that are interested in cooccurrence_clustering are comparing it to the libraries listed below
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- cTPnet Package☆24Updated 2 years ago
- RNA velocity validation☆23Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Single Cell Consensus Clustering with Speed☆21Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Updated 8 months ago
- ☆10Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- benchmark for single-cell RNA-seq imputation methods☆25Updated last year
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆16Updated 4 years ago
- ☆10Updated last year
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆12Updated 9 months ago
- ☆42Updated 4 months ago
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 4 months ago
- ☆11Updated 2 weeks ago
- Code to reproduce analysis of Milo manuscript☆12Updated 2 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 5 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 6 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆25Updated last month
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆22Updated 2 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago