pqiu / cooccurrence_clusteringView external linksLinks
☆14Feb 24, 2020Updated 5 years ago
Alternatives and similar repositories for cooccurrence_clustering
Users that are interested in cooccurrence_clustering are comparing it to the libraries listed below
Sorting:
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Dec 4, 2023Updated 2 years ago
- Identification of differentially methylated genes in biomedical data☆15Jan 26, 2026Updated 2 weeks ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 30, 2023Updated 2 years ago
- Gene Expression Decomposition and Integration☆19Feb 19, 2025Updated 11 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- ☆19Oct 27, 2021Updated 4 years ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆23Oct 20, 2025Updated 3 months ago
- ☆21Jun 17, 2024Updated last year
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Jan 17, 2023Updated 3 years ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Dec 22, 2020Updated 5 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26May 9, 2018Updated 7 years ago
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- benchmark for single-cell RNA-seq imputation methods☆29Mar 16, 2024Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Aug 5, 2022Updated 3 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Jul 27, 2023Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated 11 months ago
- ☆12Oct 29, 2025Updated 3 months ago
- Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats☆11Sep 30, 2024Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- R package for benchmarking single cell analysis methods☆32Oct 4, 2023Updated 2 years ago
- Epimap processing and analysis code repository☆33Aug 22, 2022Updated 3 years ago
- Low-dimensional Projection of Single Cell Velocity☆28Aug 26, 2022Updated 3 years ago
- ☆81Apr 26, 2022Updated 3 years ago
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆32Jul 27, 2020Updated 5 years ago
- tests for statistical significance of clustering☆38Nov 21, 2018Updated 7 years ago
- ☆32Mar 4, 2024Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Aug 10, 2023Updated 2 years ago
- ☆34Jun 12, 2019Updated 6 years ago
- ☆39Sep 1, 2025Updated 5 months ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated last year
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated last year
- Use batch balanced KNN (BBKNN) in R☆13Sep 9, 2025Updated 5 months ago
- Neural network from scratch in Python using Numpy☆11May 28, 2017Updated 8 years ago
- Repository for Rladies Amsterdam event- Intro to Bayesian Statistics☆11Sep 27, 2021Updated 4 years ago
- Localization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci☆14Dec 19, 2024Updated last year
- ☆11Dec 17, 2025Updated last month