pqiu / cooccurrence_clusteringLinks
☆13Updated 5 years ago
Alternatives and similar repositories for cooccurrence_clustering
Users that are interested in cooccurrence_clustering are comparing it to the libraries listed below
Sorting:
- cTPnet Package☆25Updated 2 years ago
- ACTIONet single-cell analysis framework☆41Updated 9 months ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆23Updated 5 months ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 5 years ago
- Spatial reconstruction of dissociated single-cell data☆18Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- ☆13Updated 2 months ago
- ☆10Updated last year
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- ☆25Updated 3 years ago
- ☆16Updated 3 years ago
- ☆21Updated 3 years ago
- ☆27Updated last week
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆35Updated 2 years ago
- ☆11Updated 2 years ago
- ☆16Updated 11 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆42Updated 9 months ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- RNA velocity validation☆22Updated 3 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 9 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated 2 years ago
- Parse ArchR arrow files to anndata h5ad☆12Updated last year
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Updated 11 months ago
- Gene group activity utility functions for Scanpy☆78Updated 6 months ago