dpeerlab / pdac-progression
☆10Updated last year
Related projects ⓘ
Alternatives and complementary repositories for pdac-progression
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆20Updated 2 weeks ago
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 6 months ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- Lung cancer 10X analysis☆11Updated 3 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆15Updated last year
- ☆37Updated 2 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆18Updated 3 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆26Updated this week
- Functions for single cell data analysis☆27Updated 3 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆21Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- ☆13Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆26Updated 2 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- ☆30Updated 7 months ago
- ☆53Updated 10 months ago
- ☆31Updated 9 months ago
- AD regulome analysis☆11Updated last year
- Identifying external communication signals using single-cell transcriptomics data☆18Updated 5 months ago
- ☆17Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 9 months ago
- ☆20Updated 7 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆30Updated 8 months ago