Copy number calling and variant classification using targeted short read sequencing
☆147Feb 19, 2026Updated 3 months ago
Alternatives and similar repositories for PureCN
Users that are interested in PureCN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆160Feb 12, 2026Updated 3 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆94May 15, 2026Updated last week
- ASCAT R package☆200Feb 12, 2026Updated 3 months ago
- CNV analysis workflow code for the manuscript☆13Jun 22, 2020Updated 5 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆101Apr 20, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆79Jan 13, 2026Updated 4 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆101Apr 19, 2026Updated last month
- Fast HLA type inference from whole-genome data☆145Apr 3, 2025Updated last year
- Annotation and Ranking of Structural Variation☆296May 12, 2026Updated last week
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆178Aug 22, 2024Updated last year
- Characterization of Germline variants☆101Mar 15, 2022Updated 4 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆209Mar 20, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆283May 21, 2025Updated last year
- Precision HLA typing from next-generation sequencing data☆217Mar 3, 2026Updated 2 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆78Sep 12, 2024Updated last year
- VarDict☆203Jan 5, 2024Updated 2 years ago
- Personal Cancer Genome Reporter (PCGR)☆277May 15, 2026Updated last week
- Various algorithms for analysing genomics data☆280Updated this week
- Copy number variant detection from targeted DNA sequencing☆610Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 3 months ago
- ☆56Jan 11, 2023Updated 3 years ago
- ☆43Feb 9, 2024Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Nov 5, 2024Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- Tools for working with genomic and high throughput sequencing data.☆366Updated this week
- Battenberg R package for subclonal copynumber estimation☆95May 11, 2026Updated last week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆515May 15, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆126Sep 5, 2023Updated 2 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆418Mar 13, 2026Updated 2 months ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 24, 2026Updated 3 weeks ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago