Copy number calling and variant classification using targeted short read sequencing
☆151Oct 6, 2026Updated this week
Alternatives and similar repositories for PureCN
Users that are interested in PureCN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆166Feb 12, 2026Updated 7 months ago
- ASCAT R package☆205Feb 12, 2026Updated 7 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆95Jun 29, 2026Updated 3 months ago
- CNV analysis workflow code for the manuscript☆13Jun 22, 2020Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆103Sep 15, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆79Jan 13, 2026Updated 8 months ago
- verifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆111Sep 25, 2026Updated 2 weeks ago
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- Fast HLA type inference from whole-genome data☆149Apr 3, 2025Updated last year
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated 2 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆219Mar 20, 2024Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆178Aug 22, 2024Updated 2 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆117Apr 2, 2025Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆285May 21, 2025Updated last year
- Precision HLA typing from next-generation sequencing data☆223May 20, 2026Updated 4 months ago
- Various algorithms for analysing genomics data☆292Updated this week
- Somatic copy variant caller (CNV) for next generation sequencing☆80Sep 12, 2024Updated 2 years ago
- VarDict☆204Jan 5, 2024Updated 2 years ago
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- ☆57Jan 11, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Copy number variant detection from targeted DNA sequencing☆616Aug 18, 2026Updated last month
- Relevant papers for CNV and SV approaches☆95Nov 5, 2024Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆32Sep 23, 2026Updated 2 weeks ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆100May 11, 2026Updated 5 months ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- FInding REliable Variants without ArTifacts☆22Nov 18, 2022Updated 3 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆537Oct 1, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆43Feb 9, 2024Updated 2 years ago
- Tools for working with genomic and high throughput sequencing data.☆373Updated this week
- ☆128Sep 5, 2023Updated 3 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆421May 25, 2026Updated 4 months ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- Analysis pipeline for cancer sequencing data☆112Sep 28, 2026Updated last week