xieyy46 / SingleMod-v1Links
☆13Updated 8 months ago
Alternatives and similar repositories for SingleMod-v1
Users that are interested in SingleMod-v1 are comparing it to the libraries listed below
Sorting:
- Xron - an omni basecaller for ONT reads.☆23Updated last year
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Updated 2 years ago
- ☆14Updated 2 years ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Updated last year
- ☆16Updated 6 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆123Updated last month
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Updated 2 weeks ago
- ☆25Updated 8 months ago
- ☆16Updated 5 years ago
- Associated code for EvoWeaver publication☆16Updated 8 months ago
- ☆18Updated 10 months ago
- A high-performance modification detection tool in Rust☆62Updated this week
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Updated 7 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- Webserver and command line tool for annotating engineered plasmids☆136Updated 6 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Fast and flexible ORF finder☆78Updated 4 years ago
- ☆12Updated 7 months ago
- Logan Unitigs and Contigs☆184Updated 4 months ago
- ☆72Updated 2 months ago
- ☆30Updated 6 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆106Updated last year
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆64Updated last month
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆162Updated last month
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆13Updated 5 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆179Updated last year
- MetaFX – library for feature extraction from whole-genome metagenome sequencing data☆16Updated 11 months ago
- ☆83Updated last year
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆100Updated 2 years ago