☆13Jun 10, 2025Updated 8 months ago
Alternatives and similar repositories for SingleMod-v1
Users that are interested in SingleMod-v1 are comparing it to the libraries listed below
Sorting:
- ☆14Oct 5, 2023Updated 2 years ago
- ☆19Mar 31, 2025Updated 11 months ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆23Nov 27, 2024Updated last year
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- ☆12Jun 23, 2025Updated 8 months ago
- ☆16Jul 28, 2025Updated 7 months ago
- ☆30Jul 28, 2025Updated 7 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Nov 15, 2021Updated 4 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Oct 13, 2025Updated 4 months ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 2 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- ☆24Dec 24, 2022Updated 3 years ago
- a tool for simulating nanopore raw signal data☆73Updated this week
- Detection of m6A from direct RNA-Seq data☆131May 19, 2025Updated 9 months ago
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆10Jun 12, 2024Updated last year
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Jul 8, 2025Updated 7 months ago
- ☆82Jan 6, 2025Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆46Feb 3, 2026Updated last month
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆44Jul 19, 2024Updated last year
- SPIDER-WEB generates coding algorithms with superior error tolerance and real-time information retrieval capacity☆11Jun 21, 2024Updated last year
- ☆12Apr 29, 2024Updated last year
- Redefining Video Management with power of SQL☆11Oct 15, 2023Updated 2 years ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- Methylation/modified base calling separated from basecalling.☆182Sep 17, 2024Updated last year
- Code for "Learning Harmonic Molecular Representations on Riemannian Manifold", ICLR, 2023☆10Mar 23, 2023Updated 2 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Data for paper "Random Access in Large-Scale DNA Data Storage"☆13Jan 11, 2018Updated 8 years ago
- ☆11May 6, 2021Updated 4 years ago
- PACE: Pacing Operator Learning to Accurate Optical Field Simulation for Complicated Photonic Devices, NeurIPs 2024☆16Dec 13, 2024Updated last year
- Python3 Read Until API implementation☆11Mar 11, 2020Updated 5 years ago
- Neural multiclass ab initio reconstruction for cryo-EM.☆13Dec 5, 2024Updated last year
- 南方科技大学图书馆LaTeX培训讲座，⬇️是讨论区☆10Sep 7, 2021Updated 4 years ago