deepSRAMP is a accurate deep learning model for predicting m6A sites by fusing the sequence and genomic position features
☆14Nov 29, 2025Updated 10 months ago
Alternatives and similar repositories for deepSRAMP
Users that are interested in deepSRAMP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated 2 years ago
- ☆19Mar 31, 2025Updated last year
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated last year
- ☆15Jun 10, 2025Updated last year
- ☆10Jun 13, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- neuropeptide prediction☆15Sep 2, 2022Updated 4 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆47Jun 7, 2026Updated 4 months ago
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- ☆10Mar 11, 2025Updated last year
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 6 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- A multi-task neural network for predicting perturbation responses to Alternative Polyadenylation usage levels☆11May 18, 2023Updated 3 years ago
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code for Nanodesigner: resolving the complex-CDR interdependency with iterative refinement paper☆17Aug 17, 2025Updated last year
- ☆25Dec 24, 2022Updated 3 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- ☆10Mar 20, 2024Updated 2 years ago
- ☆11Feb 21, 2023Updated 3 years ago
- ☆34Aug 27, 2025Updated last year
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- A set of scripts and functions for analyzing MeDIP-seq datasets☆16Feb 3, 2026Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- scripts used to download and analyze insect assemblies from GenBank☆15Feb 16, 2021Updated 5 years ago
- Functional-trained variant effect predictor☆18Aug 27, 2026Updated last month
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆12Sep 26, 2024Updated 2 years ago
- Gene perturbation prediction using LLM embeddings☆17Sep 16, 2026Updated last month
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- R package for the analysis of OK-Seq data to study DNA replication fork directionality: from count matrices, RFD calculation to inititati…☆12Feb 8, 2023Updated 3 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆45Apr 16, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Perl/R pipeline for plotting metagenes☆41Mar 21, 2026Updated 7 months ago
- A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis☆10Nov 6, 2023Updated 2 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- ☆13Oct 19, 2023Updated 3 years ago
- ☆16Jun 30, 2022Updated 4 years ago
- ☆15Apr 13, 2026Updated 6 months ago