Alternatives and similar repositories for basecalling_architectures

Users that are interested in basecalling_architectures are comparing it to the libraries listed below

• xieyy46 / SingleMod-v1
  ☆13Updated 8 months ago
• haotianteng / Xron
  Xron - an omni basecaller for ONT reads.
  ☆23Updated last year
• marcpaga / nanopore_benchmark
  ☆30Updated 6 months ago
• biodlab / RODAN
  A fully convolutional architecture for basecalling nanopore RNA sequencing data
  ☆11Updated last year
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆63Updated 2 years ago
• weir12 / DeepEdit
  DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing
  ☆17Updated 2 years ago
• guangzhaocs / SegPore
  SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.
  ☆13Updated 2 weeks ago
• darelab2014 / Dinopore
  DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
  ☆19Updated 2 years ago
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆72Updated last week
• skovaka / uncalled4
  ☆83Updated last year
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆128Updated last month
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆178Updated last year
• nanoporetech / remora
  Methylation/modified base calling separated from basecalling.
  ☆182Updated last year
• lrslab / nanoCEM
  "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.
  ☆17Updated 3 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆117Updated 10 months ago
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆101Updated 9 months ago
• bartongroup / yanocomp
  Yet another nanopore modification comparison tool
  ☆12Updated 3 years ago
• marcpaga / esox
  ☆17Updated 3 months ago
• sihaohuanguc / NanoSPA
  ☆14Updated 2 years ago
• jordisr / poreover
  Nanopore basecalling and consensus decoding
  ☆46Updated 3 years ago
• PengNi / deepsignal-plant
  Detecting methylation using signal-level features from Nanopore sequencing reads of plants
  ☆64Updated last month
• mem3nto0 / ModiDeC-RNA-modification-classifier
  ☆12Updated 7 months ago
• weir12 / DENA
  Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
  ☆22Updated 3 years ago
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆210Updated last week
• liyu95 / DeepSimulator
  The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
  ☆123Updated 5 years ago
• smarco / WFA2-lib
  WFA-lib: Wavefront alignment algorithm library v2
  ☆208Updated this week
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆35Updated 3 months ago
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆192Updated this week
• gsneha26 / SegAlign
  A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
  ☆69Updated last year
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆134Updated 3 months ago