WGLab / LongReadSum
☆13Updated last month
Related projects ⓘ
Alternatives and complementary repositories for LongReadSum
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 6 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated 11 months ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆24Updated 3 weeks ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 3 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated last week
- ☆30Updated 2 weeks ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆30Updated last month
- ☆15Updated 7 months ago
- ☆22Updated 3 years ago
- ☆21Updated 3 weeks ago
- Immuological gene typing and annotation for genome assembly☆31Updated last month
- Working space for the GIAB TR benchmarking project☆20Updated last month
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆33Updated 4 months ago
- ☆12Updated 7 months ago
- ☆29Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆22Updated 3 months ago
- A VCF comparison engine for structual variant benchmarking☆19Updated 7 months ago
- ☆46Updated 5 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Structural variant benchmark of challenging medically relevant genes☆17Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆22Updated 6 months ago
- MarginPolish: Graph based assembly polishing☆45Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 6 months ago