WGLab / LongReadSumLinks
☆24Updated 3 weeks ago
Alternatives and similar repositories for LongReadSum
Users that are interested in LongReadSum are comparing it to the libraries listed below
Sorting:
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated last month
- Scoring GT/AG sites for improving spliced alignment☆45Updated 2 weeks ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆61Updated last week
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆35Updated 5 months ago
- A local-haplotagging-based small and structural variant caller☆80Updated last month
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆20Updated last year
- A battery of methylation tools for PacBio HiFi reads☆42Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- Variant annotation and merging pipeline☆39Updated 2 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- python plotly Circos from VCF☆39Updated last year
- Structural variant merging tool☆55Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated last month
- ☆22Updated 4 years ago
- ☆36Updated 2 months ago
- ☆66Updated last month
- ☆78Updated 5 years ago
- ☆32Updated last year
- ☆45Updated 7 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated last month
- WDL workflows for variant calling and assembly using ONT☆36Updated this week
- ☆31Updated last year