☆29Sep 11, 2025Updated 6 months ago
Alternatives and similar repositories for LongReadSum
Users that are interested in LongReadSum are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jan 15, 2025Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Complex structural variant visualization for HiFi sequencing data☆47Oct 24, 2025Updated 5 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆12Nov 6, 2023Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 6 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 4 months ago
- Genome browser hub for the T2T genomes and resources☆27Updated this week
- ☆13Jul 17, 2024Updated last year
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 7 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 2 weeks ago
- Multi-genome synteny block visualization tool☆55Mar 25, 2026Updated 2 weeks ago
- ☆248Apr 1, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Apr 29, 2024Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated last month
- A tool for motif annotation and visualization in tandem repeats.☆11May 26, 2025Updated 10 months ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Open Human Genome Library☆64Dec 22, 2025Updated 3 months ago
- Correcting errors in noisy long reads using variation graphs☆51Nov 17, 2022Updated 3 years ago
- heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerfu…☆10Sep 2, 2021Updated 4 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆72Nov 4, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Scoring GT/AG sites for improving spliced alignment☆52Nov 10, 2025Updated 4 months ago
- Kmer Analysis of Pileups for Genotyping☆38Mar 6, 2026Updated last month
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆32Mar 17, 2026Updated 3 weeks ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Snakemake pipeline for benchmarking read mappers☆16Dec 11, 2023Updated 2 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆20Dec 2, 2025Updated 4 months ago
- ☆39Apr 25, 2023Updated 2 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Mar 31, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆18Dec 26, 2025Updated 3 months ago
- A VCF comparison engine for structual variant benchmarking☆23Sep 26, 2025Updated 6 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Genome Assembly 102☆17Apr 23, 2025Updated 11 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆44Mar 31, 2026Updated last week
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 6 months ago