WGLab / LongReadSum
☆13Updated last month
Related projects ⓘ
Alternatives and complementary repositories for LongReadSum
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 6 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated 11 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- ☆21Updated last week
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆33Updated 4 months ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 3 months ago
- Variant annotation and merging pipeline☆29Updated last week
- ☆12Updated 6 months ago
- ☆15Updated 6 months ago
- SV calling for diploid assemblies☆23Updated 7 months ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆28Updated 2 weeks ago
- ☆45Updated 4 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated last month
- Tumour-only somatic mutation calling using long reads☆24Updated 2 weeks ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆22Updated 5 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆20Updated last year
- An insertion caller for Illumina paired-end WGS data.☆22Updated 3 months ago
- ☆30Updated this week
- Population-wide Deletion Calling☆34Updated 2 months ago
- A tutorial on structural variant calling for short read sequencing data☆26Updated 2 weeks ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- ☆22Updated 3 years ago
- ☆25Updated 2 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆27Updated last year
- Structural variant merging tool☆44Updated 2 months ago
- perSVade: personalized Structural Variation detection☆36Updated 4 months ago
- WDL workflows for variant calling and assembly using ONT☆28Updated last month