Analyse RNA feature distributions.
☆21Dec 16, 2024Updated last year
Alternatives and similar repositories for R2Dtool
Users that are interested in R2Dtool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆46Jun 7, 2026Updated 4 months ago
- ☆13Oct 5, 2023Updated 3 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Aug 27, 2025Updated last year
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated 2 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆15Jul 24, 2025Updated last year
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 5 years ago
- ☆17Apr 15, 2025Updated last year
- Long-read Isoform Quantification and Analysis☆41Mar 25, 2025Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆19Mar 31, 2025Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- ☆21Jul 16, 2024Updated 2 years ago
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆19Nov 25, 2020Updated 5 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 3 years ago
- Master of Pores 2☆23Dec 4, 2024Updated last year
- ☆14Jul 18, 2025Updated last year
- A nextflow pipeline for calling modifications in nanopore reads.☆17Sep 28, 2026Updated last week
- lossless nanopore pod5 <=> s/blow5 file conversion☆50Aug 26, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 4 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆40Nov 8, 2023Updated 2 years ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Sep 26, 2026Updated last week
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 4 years ago
- ☆10Sep 4, 2024Updated 2 years ago
- ☆14Aug 24, 2026Updated last month
- 📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.☆14Mar 5, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scripts for next generation sequencing analyses☆15Aug 11, 2026Updated last month
- SpotGF: Denoising Spatially Resolved Transcriptomics Data Using an Optimal Transport-Based Gene Filtering Algorithm☆21Apr 8, 2025Updated last year
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- ☆25Dec 24, 2022Updated 3 years ago
- Embeddings to Network Alignment - align biological networks between two species☆10Sep 8, 2023Updated 3 years ago
- Single Cell RNA PolyA Site Discovery☆11Jul 27, 2026Updated 2 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆59Oct 14, 2024Updated last year