Alternatives and similar repositories for R2Dtool:

Users that are interested in R2Dtool are comparing it to the libraries listed below

• bbglab / openvariant
  Read, parse and operate different multiple input file formats with OpenVariant
  ☆11Updated last month
• XiDsLab / TAGET
  ☆17Updated 2 years ago
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 2 months ago
• Janga-Lab / Penguin
  Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
  ☆13Updated 3 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 9 months ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆31Updated 5 years ago
• joshidhaivat / QAlign
  ☆9Updated 3 years ago
• bartongroup / differr_nanopore_DRS
  Scripts for identifying sites with differential error rates in mapped nanopore DRS data
  ☆11Updated 4 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 4 months ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated last month
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆17Updated 8 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆20Updated 7 months ago
• human-pangenomics / hprc-tutorials
  ☆14Updated 9 months ago
• holstegelab / MotifScope
  A tool for motif annotation and visualization in tandem repeats.
  ☆10Updated 3 months ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆14Updated 6 months ago
• liusy-jz / MODAS
  MODAS: Multi-Omics Data Association Study toolkit
  ☆21Updated last month
• Xinglab / isoCirc
  isoCirc
  ☆10Updated last year
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆29Updated last month
• RacconC / gtftools
  ☆13Updated last year
• Runsheng / trackcluster
  An analysis pipeline for Nanopore direct-RNA sequencing
  ☆11Updated last month
• LappalainenLab / lorals
  ☆33Updated last year
• epi2me-labs / pore-c-py
  ☆12Updated 5 months ago
• xia-lab / Seq2Fun
  ☆16Updated 9 months ago
• EliseCoopman / methylmap
  Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
  ☆18Updated last week
• huangnengCSU / longcallR
  LongcallR is a small variant caller for single molecule long-read RNA-seq data
  ☆42Updated 3 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated last month
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆56Updated last month
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago