Alternatives and similar repositories for R2Dtool:

Users that are interested in R2Dtool are comparing it to the libraries listed below

• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆31Updated 6 years ago
• Janga-Lab / Penguin
  Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
  ☆13Updated 3 years ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 3 months ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆14Updated 8 months ago
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 4 months ago
• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆14Updated last month
• bbglab / openvariant
  Read, parse and operate different multiple input file formats with OpenVariant
  ☆12Updated last week
• hitbc / gcSV
  ☆15Updated last month
• XiDsLab / TAGET
  ☆17Updated 2 years ago
• holstegelab / MotifScope
  A tool for motif annotation and visualization in tandem repeats.
  ☆10Updated 6 months ago
• mcfrith / dnarrange
  ☆16Updated 2 months ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆21Updated 10 months ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆23Updated 3 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 6 months ago
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆18Updated 10 months ago
• WGLab / AmpBinner
  A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data
  ☆10Updated 4 months ago
• makovalab-psu / T2T_primate_XY
  ☆13Updated 9 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆17Updated 3 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 3 months ago
• ktan8 / nanopore_telomere_basecall
  ☆14Updated last year
• bartongroup / differr_nanopore_DRS
  Scripts for identifying sites with differential error rates in mapped nanopore DRS data
  ☆11Updated 4 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆12Updated last year
• Xinglab / isoCirc
  isoCirc
  ☆10Updated last year
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆22Updated 2 years ago
• liusy-jz / MODAS
  MODAS: Multi-Omics Data Association Study toolkit
  ☆21Updated 4 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 6 months ago
• Runsheng / trackcluster
  An analysis pipeline for Nanopore direct-RNA sequencing
  ☆13Updated 4 months ago
• vladimirsouza / lrRNAseqVariantCalling
  Codes for the Iso-Seq variant-calling paper
  ☆11Updated last year