sunnsset / Benchmarking_single-cell_RNA_and_ATAC_data_integration
☆10Updated 10 months ago
Alternatives and similar repositories for Benchmarking_single-cell_RNA_and_ATAC_data_integration:
Users that are interested in Benchmarking_single-cell_RNA_and_ATAC_data_integration are comparing it to the libraries listed below
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 6 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 10 months ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- domain adaptation of spatial and single-cell transcriptome☆27Updated 7 months ago
- ☆26Updated 4 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆20Updated 5 months ago
- ☆29Updated 3 weeks ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- ☆21Updated 8 months ago
- Spatial Transcriptomic Analysis of OSCC samples☆24Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- ☆32Updated 3 weeks ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated last month
- ☆21Updated 10 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Python implementation of Gene Trajectory☆25Updated 8 months ago
- ☆22Updated 2 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆9Updated last year
- inferring regulatory cellular dynamics☆41Updated this week
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated 2 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- ☆48Updated last month
- Spatial direct messaging detected by bivariate Moran☆26Updated last week
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- scLearn:Learning for single cell assignment☆35Updated 4 months ago
- ☆17Updated 9 months ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆18Updated 4 months ago