KellisLab / scdemonLinks
single-cell decorrelated module networks
☆30Updated last year
Alternatives and similar repositories for scdemon
Users that are interested in scdemon are comparing it to the libraries listed below
Sorting:
- ☆20Updated 2 years ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 3 weeks ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 4 months ago
- ☆12Updated 2 years ago
- Inference of TCR motifs☆32Updated 7 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 9 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- ☆24Updated 4 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆15Updated 9 months ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆48Updated 8 months ago
- epigenome analysis to rank transcription factors☆15Updated 6 years ago
- ☆23Updated last year
- Fast motif matching in R☆46Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated last week
- ☆45Updated 2 weeks ago
- ☆44Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated 2 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- ☆25Updated 3 years ago
- Tools for assessing clustering robustness☆31Updated last week
- Analysis and visualization of RNA-Seq results☆30Updated last month
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Updated 2 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Updated 3 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Updated last year
- Landscape Single Cell Entropy☆21Updated 5 years ago