KellisLab / scdemonLinks
single-cell decorrelated module networks
☆27Updated last year
Alternatives and similar repositories for scdemon
Users that are interested in scdemon are comparing it to the libraries listed below
Sorting:
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- ☆20Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Inference of TCR motifs☆32Updated 4 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆13Updated 11 months ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 4 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 3 weeks ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- Scripts to reproduce analyses of tradeSeq paper.☆16Updated 5 years ago
- ☆25Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- ☆12Updated 6 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Fast motif matching in R☆46Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated 6 months ago
- ☆12Updated 4 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆14Updated 6 months ago
- ☆17Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago
- ☆39Updated 4 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Gene Expression Decomposition and Integration☆19Updated 8 months ago
- Landscape Single Cell Entropy☆20Updated 5 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 6 months ago
- A single cell sequencing read simulator.☆33Updated last year
- ☆18Updated 2 years ago