bernardo-de-almeida / motif-clusteringLinks
Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
☆26Updated 2 years ago
Alternatives and similar repositories for motif-clustering
Users that are interested in motif-clustering are comparing it to the libraries listed below
Sorting:
- ☆19Updated 2 years ago
- Statistically Significant loops from HiChIP data☆43Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 4 months ago
- ☆22Updated 4 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Detection and couting alternative TSS in single cells☆14Updated last year
- ☆28Updated 6 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- ☆49Updated 10 months ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- RiboPlotR package for Ribo-plot☆15Updated last week
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated 3 weeks ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- IDR☆31Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- A network-based approach for exon set enrichment☆15Updated 2 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- chia pet analysis software☆25Updated 6 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆27Updated last year
- ☆17Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- A short tutorial to using DL and keras for genomics with sequence data.☆15Updated 4 years ago