zhengdafangyuan / HiPore-CLinks
We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that integrated multi-fragment ligates preparation with third-generation sequencing technology. With HiPore-C approach, we could explore higher-order chromatin interaction genome-widely.
☆19Updated last year
Alternatives and similar repositories for HiPore-C
Users that are interested in HiPore-C are comparing it to the libraries listed below
Sorting:
- ☆41Updated 4 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 7 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- ☆33Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last week
- ☆15Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆50Updated 3 months ago
- A novel genome assembly pipeline based on deep learning☆62Updated 6 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 11 months ago
- A pipeline for isoseq☆23Updated 7 years ago
- a software for annotating plant genes☆22Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- ☆23Updated 2 years ago
- 4C-seq processing pipeline☆23Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆56Updated 5 months ago
- an efficient Hi-C data processing pipeline☆17Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated 3 weeks ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Updated last year
- ☆16Updated 2 months ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆20Updated last week
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- ☆36Updated 2 years ago
- ☆31Updated last year