We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that integrated multi-fragment ligates preparation with third-generation sequencing technology. With HiPore-C approach, we could explore higher-order chromatin interaction genome-widely.
☆23Mar 17, 2024Updated 2 years ago
Alternatives and similar repositories for HiPore-C
Users that are interested in HiPore-C are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Aug 14, 2024Updated last year
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆15Oct 23, 2024Updated last year
- Discovery of communities in Pore-C concatemers☆15Feb 12, 2025Updated last year
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆31Jul 20, 2022Updated 3 years ago
- ☆50Nov 24, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A software for hypergraph and multi-way network analysis 🌐☆34Aug 2, 2025Updated 7 months ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- ☆16Dec 25, 2024Updated last year
- The tools for your .cool's☆162Mar 19, 2026Updated last week
- Blazing fast toolkit to work with .hic and .cool files☆44Updated this week
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps☆15Nov 22, 2022Updated 3 years ago
- A cool place to store your Hi-C☆232Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 4 months ago
- ☆36Feb 22, 2023Updated 3 years ago
- A tool for motif annotation and visualization in tandem repeats.☆11May 26, 2025Updated 10 months ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- ☆22Aug 11, 2020Updated 5 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated 8 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆128Feb 3, 2026Updated last month
- trackc aims to produce beautiful genome tracks that are highly customizable☆17Jan 21, 2026Updated 2 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆42Jan 31, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Mar 16, 2026Updated last week
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Nov 6, 2025Updated 4 months ago
- ☆17Nov 19, 2025Updated 4 months ago
- ☆22Apr 2, 2015Updated 10 years ago
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 3 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 9 months ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- python module to plot beautiful and highly customizable genome browser tracks☆868Jul 10, 2024Updated last year
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated 7 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Apr 4, 2024Updated last year
- ☆13Mar 16, 2026Updated last week
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 3 months ago
- ☆16Apr 3, 2023Updated 2 years ago
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago