Discovery of communities in Pore-C concatemers
☆16Feb 12, 2025Updated last year
Alternatives and similar repositories for chromunity
Users that are interested in chromunity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A software for hypergraph and multi-way network analysis 🌐☆39May 23, 2026Updated 4 months ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆23Mar 17, 2024Updated 2 years ago
- ☆18Aug 14, 2024Updated 2 years ago
- ☆54Nov 24, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A cross-platform method for chromatin contact normalization☆16Dec 29, 2025Updated 8 months ago
- CIKM2022: source code for "hypergraph learning with line expansion" paper☆19May 19, 2023Updated 3 years ago
- ☆23Jul 27, 2023Updated 3 years ago
- ☆36Feb 22, 2023Updated 3 years ago
- PPL (Pore-C PipLine) is a set of tools to process, evaluate and visualize the multi-way contacts experiment based on 3C and ONT long read…☆16Apr 22, 2025Updated last year
- An implementation of Boltzmann generators using pytorch.☆11Dec 2, 2019Updated 6 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆79Jul 22, 2025Updated last year
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆14Nov 4, 2022Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆44Jan 31, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆21Apr 23, 2024Updated 2 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 5 years ago
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆31Jul 20, 2022Updated 4 years ago
- BS-seq analysis pipeline☆47Mar 28, 2023Updated 3 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆25Mar 9, 2026Updated 6 months ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆63Aug 28, 2025Updated last year
- a computational tool for analyzing single cell Hi-C data☆27Apr 23, 2024Updated 2 years ago
- WashU Epigenome Browser (2nd generation, 2017-2022)☆77Mar 18, 2025Updated last year
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆42Jul 24, 2026Updated last month
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 3 years ago
- A Grammarly extension for PopClip.☆15Nov 7, 2023Updated 2 years ago
- Pore-C support☆54Feb 22, 2023Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 4 years ago
- ☆15Apr 19, 2020Updated 6 years ago
- A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.☆15May 3, 2023Updated 3 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆28Jul 23, 2026Updated last month
- GEMTools main repository☆17Jun 21, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- Genome-wide contact analysis using sklearn☆78Mar 23, 2024Updated 2 years ago
- Java Bindings (JNI) for bwa☆22Dec 15, 2016Updated 9 years ago
- HiChiP QC and data analysis☆13Mar 12, 2024Updated 2 years ago
- 爬取贝壳网的二手房成交数据,这是爬虫☆16Nov 12, 2018Updated 7 years ago
- A cool place to store your Hi-C☆245Updated this week
- The tools for your .cool's☆171Mar 19, 2026Updated 6 months ago