mskilab-org / chromunity
Discovery of communities in Pore-C concatemers
☆11Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for chromunity
- ☆33Updated last year
- ☆12Updated 3 months ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆17Updated 8 months ago
- R package to evaluate the reproducibility of Hi-C data☆25Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- ☆34Updated 2 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 10 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated 9 months ago
- Single-cell Hi-C data analysis toolbox☆24Updated 3 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated 4 months ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆45Updated 3 months ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆13Updated last year
- HiChiP QC and data analysis☆12Updated 8 months ago
- Lightweight converter between hic and cool contact matrices.☆67Updated 4 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆23Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆67Updated last year
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆18Updated 10 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆76Updated 3 months ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- ☆35Updated 5 years ago
- Micro-C QC and data analysis☆12Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- Statistically Significant loops from HiChIP data☆39Updated 7 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- A Python implementation for BH-FDR and HiCCUPS☆41Updated 2 weeks ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆52Updated last year