Discovery of communities in Pore-C concatemers
☆16Feb 12, 2025Updated last year
Alternatives and similar repositories for chromunity
Users that are interested in chromunity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A software for hypergraph and multi-way network analysis 🌐☆40May 23, 2026Updated 5 months ago
- ☆36Feb 22, 2023Updated 3 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated 2 years ago
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆22Mar 17, 2024Updated 2 years ago
- BS-seq analysis pipeline☆47Mar 28, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A cross-platform method for chromatin contact normalization☆18Dec 29, 2025Updated 10 months ago
- CIKM2022: source code for "hypergraph learning with line expansion" paper☆19May 19, 2023Updated 3 years ago
- PPL (Pore-C PipLine) is a set of tools to process, evaluate and visualize the multi-way contacts experiment based on 3C and ONT long read…☆16Apr 22, 2025Updated last year
- An implementation of Boltzmann generators using pytorch.☆11Dec 2, 2019Updated 6 years ago
- ☆18Aug 14, 2024Updated 2 years ago
- ☆54Nov 24, 2025Updated 11 months ago
- ☆23Jul 27, 2023Updated 3 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆44Jan 31, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆21Apr 23, 2024Updated 2 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆28Jul 23, 2026Updated 3 months ago
- Pore-C support☆54Feb 22, 2023Updated 3 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆14Nov 4, 2022Updated 3 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 5 years ago
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆30Jul 20, 2022Updated 4 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆25Mar 9, 2026Updated 7 months ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆63Aug 28, 2025Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆42Oct 5, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a computational tool for analyzing single cell Hi-C data☆27Apr 23, 2024Updated 2 years ago
- Genome-wide contact analysis using sklearn☆79Mar 23, 2024Updated 2 years ago
- A Python implementation for BH-FDR and HiCCUPS☆55Dec 29, 2025Updated 10 months ago
- A Grammarly extension for PopClip.☆15Nov 7, 2023Updated 2 years ago
- WashU Epigenome Browser (2nd generation, 2017-2022)☆77Mar 18, 2025Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆43Jul 6, 2023Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 4 years ago
- ☆15Apr 19, 2020Updated 6 years ago
- A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.☆15May 3, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 3 years ago
- GEMTools main repository☆17Jun 21, 2022Updated 4 years ago
- HiChiP QC and data analysis☆13Mar 12, 2024Updated 2 years ago
- Java Bindings (JNI) for bwa☆22Dec 15, 2016Updated 9 years ago
- MVGCN: a novel multi-view graph convolutional network (MVGCN) framework for link prediction in biomedical bipartite networks.☆22Aug 19, 2022Updated 4 years ago
- 爬取贝壳网的二手房成交数据，这是爬虫☆16Nov 12, 2018Updated 7 years ago
- A cool place to store your Hi-C☆248Updated this week