nanoporetech / pore-c
Pore-C support
☆53Updated 2 years ago
Alternatives and similar repositories for pore-c:
Users that are interested in pore-c are comparing it to the libraries listed below
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆47Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆37Updated last month
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- ☆47Updated 7 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- ☆33Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 5 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated 11 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- A program for assessing the T2T genome continuity☆69Updated 3 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- SRF: Satellite Repeat Finder☆93Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Algorithm to detect germline and de novo transposon insertions☆27Updated 11 months ago
- ☆79Updated 3 weeks ago
- ☆29Updated 4 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- PacBio BAM toolkit☆41Updated last month
- BamDeal: a comprehensive toolkit for bam manipulation☆53Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆33Updated last week
- A local-haplotagging-based small and structural variant caller☆69Updated last week
- A battery of methylation tools for PacBio HiFi reads☆32Updated 3 weeks ago
- ☆76Updated 4 years ago
- Drosophila transposable element canonical sequences☆28Updated 2 years ago