nanoporetech / pore-cLinks
Pore-C support
☆54Updated 2 years ago
Alternatives and similar repositories for pore-c
Users that are interested in pore-c are comparing it to the libraries listed below
Sorting:
- ☆35Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆59Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 7 months ago
- ☆52Updated 4 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ☆84Updated 11 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Copy number caller for long read data including SNV utilization☆68Updated 10 months ago
- Toolkit for calling structural variants using short or long reads☆115Updated 2 weeks ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆60Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Somatic structural variant caller for long-read data☆87Updated 2 months ago
- ☆30Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 5 years ago
- Code for phasing SVs with SNPs☆54Updated 5 years ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- python plotly Circos from VCF☆40Updated last year
- Variant annotation and merging pipeline☆42Updated 6 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆53Updated 11 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Fast and accurate coordinate conversion between assemblies☆118Updated 4 months ago
- ☆49Updated 2 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆47Updated last year