jackhump / WGS-QC-Pipeline
A Snakemake pipeline for Quality Control of Whole Genome Sequencing data
☆12Updated 2 years ago
Related projects: ⓘ
- ☆16Updated 4 months ago
- Readme☆10Updated 4 years ago
- ☆12Updated 3 years ago
- RNA-seq analysis scripts☆15Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆14Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆21Updated last year
- ☆14Updated last month
- ☆17Updated 2 months ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- R Package for phasing of single cell Strand-seq data☆10Updated 5 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 5 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆9Updated 3 years ago
- Fine-mapping with infinitesimal effects☆13Updated 6 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆15Updated 3 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆19Updated 2 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆15Updated last year
- ☆18Updated this week
- ☆19Updated 4 months ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 4 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 2 years ago
- GWAS genetics Fine-mapping method☆15Updated 4 months ago
- ☆21Updated last year
- ☆11Updated last year
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Updated last month
- Scripts used for the ACT paper☆12Updated 3 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆15Updated 3 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆10Updated 10 months ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated last year