A Snakemake pipeline for Quality Control of Whole Genome Sequencing data
☆14Jan 18, 2022Updated 4 years ago
Alternatives and similar repositories for WGS-QC-Pipeline
Users that are interested in WGS-QC-Pipeline are comparing it to the libraries listed below
Sorting:
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆19Jan 9, 2026Updated last month
- ☆13Sep 7, 2022Updated 3 years ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Mar 14, 2019Updated 6 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- a bucket of bioinformatics scripts☆13Updated this week
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆17Feb 23, 2026Updated last week
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- ☆24Nov 9, 2017Updated 8 years ago
- ☆23Oct 30, 2022Updated 3 years ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆24Aug 6, 2025Updated 7 months ago
- ☆10Jan 30, 2020Updated 6 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated last week
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- ☆10Dec 2, 2025Updated 3 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- scripts for RNA-Seq analysis☆28Feb 20, 2022Updated 4 years ago
- Toolkit for analyzing genetics data from admixed populations☆30Feb 13, 2025Updated last year
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆14Feb 23, 2023Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- shared scripts in Lu Lab @ Tsinghua University☆14Nov 7, 2018Updated 7 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 4 months ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- ☆11May 10, 2025Updated 9 months ago
- My attempts at recreating the visualisations by W.E.B. DuBois as part of the DuBois Challenge.☆11Jan 5, 2023Updated 3 years ago
- Plot allele frequencies in VCF files☆11Jun 4, 2019Updated 6 years ago