KrishnaswamyLab / Cell-Dynamics-PipelineLinks
☆10Updated 2 years ago
Alternatives and similar repositories for Cell-Dynamics-Pipeline
Users that are interested in Cell-Dynamics-Pipeline are comparing it to the libraries listed below
Sorting:
- ☆64Updated 2 years ago
- Invariant Representation learning☆18Updated last year
- Multiscale earth mover's distance methods for tree and manifold structured data☆12Updated 10 months ago
- Spatial reconstruction of dissociated single-cell data☆19Updated 2 years ago
- Global Waddington-OT☆23Updated 9 months ago
- Dynamic inference from single-cell snapshots by optimal transport☆19Updated last year
- Diffusion model for gene regulatory network inference.☆24Updated 5 months ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13Updated last year
- Deep Generative Modeling of RNA Velocity☆36Updated 2 months ago
- Code and example of the D-SPIN framework☆24Updated last week
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 4 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆131Updated last year
- ☆14Updated 5 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆23Updated 10 months ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- ☆38Updated last month
- ☆41Updated last week
- A simulator for single-cell expression data guided by gene regulatory networks☆73Updated last year
- Functional and Learnable Cell dynamicS☆21Updated 8 months ago
- Learning meaningful representations of genes☆21Updated 6 months ago
- spatial transcriptome, single cell☆73Updated 2 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆34Updated last year
- Evaluation framework for computationally inferred gene networks from single-cell data.☆18Updated 2 months ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Updated 2 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 3 years ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Updated last year
- ☆18Updated 4 years ago