Alternatives and similar repositories for Cell-Dynamics-Pipeline

Users that are interested in Cell-Dynamics-Pipeline are comparing it to the libraries listed below

• theislab / inVAE
  Invariant Representation learning
  ☆18Updated last year
• Genentech / sVAE
  ☆63Updated 2 years ago
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 7 months ago
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆19Updated 6 months ago
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆13Updated last year
• atong01 / MultiscaleEMD
  Multiscale earth mover's distance methods for tree and manifold structured data
  ☆12Updated 8 months ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆23Updated 3 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆23Updated 8 months ago
• zsteve / StationaryOT
  Dynamic inference from single-cell snapshots by optimal transport
  ☆19Updated last year
• davidbuterez / CellVGAE
  An unsupervised scRNA-seq analysis workflow with graph attention networks
  ☆26Updated 2 years ago
• theislab / prophet
  ☆38Updated 2 weeks ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆24Updated 2 weeks ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• YosefLab / velovi
  ☆40Updated last week
• ChengF-Lab / autoCell
  ☆16Updated 3 years ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆118Updated last year
• pqiu / cooccurrence_clustering
  ☆14Updated 5 years ago
• lamanno-epfl / velocycle
  Bayesian model for RNA velocity estimation of periodic manifolds
  ☆33Updated last year
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• vandijklab / CINEMA-OT
  ☆34Updated 7 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆71Updated 2 years ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆29Updated 3 months ago
• scverse / simple-scvi
  Simple scVI implementation
  ☆12Updated last week
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆56Updated this week
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated 4 months ago
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆32Updated 2 years ago
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆43Updated last year
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 4 months ago