Alternatives and similar repositories for Cell-Dynamics-Pipeline:

Users that are interested in Cell-Dynamics-Pipeline are comparing it to the libraries listed below

• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated last week
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆12Updated 10 months ago
• zsteve / StationaryOT
  Dynamic inference from single-cell snapshots by optimal transport
  ☆19Updated last year
• YosefLab / velovi
  ☆39Updated last week
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 7 months ago
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆12Updated last month
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆21Updated last month
• lamanno-epfl / velocycle
  Bayesian model for RNA velocity estimation of periodic manifolds
  ☆32Updated 9 months ago
• altoslabs / perturbench
  ☆24Updated 2 months ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆16Updated last week
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆19Updated 2 weeks ago
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆17Updated last year
• vandijklab / CINEMA-OT
  ☆31Updated 5 months ago
• pqiu / cooccurrence_clustering
  ☆13Updated 5 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆46Updated 2 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆16Updated 5 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆33Updated 9 months ago
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆13Updated 5 months ago
• Genentech / sVAE
  ☆59Updated last year
• theislab / inVAE
  Invariant Representation learning
  ☆14Updated 9 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 6 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆29Updated 6 months ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆22Updated last year
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago