gevaertlab / MethylMixLinks
Identification of differentially methylated genes in biomedical data
☆15Updated 6 years ago
Alternatives and similar repositories for MethylMix
Users that are interested in MethylMix are comparing it to the libraries listed below
Sorting:
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Tools for assessing clustering robustness☆28Updated 2 months ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- ☆29Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- R package for bcbio single-cell RNA-seq analysis.☆30Updated last year
- CellNet, for cancer☆10Updated 3 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- ☆47Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- ☆14Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Explore the cancer relevance of your gene list☆52Updated this week
- Model-based tumour subclonal deconvolution using population genetics☆33Updated this week
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆19Updated 2 weeks ago
- R package for Flexible dot plots☆29Updated 3 years ago