gevaertlab / MethylMixLinks
Identification of differentially methylated genes in biomedical data
☆15Updated 6 years ago
Alternatives and similar repositories for MethylMix
Users that are interested in MethylMix are comparing it to the libraries listed below
Sorting:
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆47Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆41Updated 7 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- ☆28Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 4 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- ☆30Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Fast motif matching in R☆46Updated last year
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆65Updated 2 years ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- R package for bcbio single-cell RNA-seq analysis.☆30Updated 11 months ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last month
- workshop website on readthedocs☆19Updated this week
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Explore and download data from the recount3 project☆36Updated 3 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year