gevaertlab / MethylMixLinks
Identification of differentially methylated genes in biomedical data
☆15Updated 6 years ago
Alternatives and similar repositories for MethylMix
Users that are interested in MethylMix are comparing it to the libraries listed below
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- ☆41Updated 7 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated last week
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Updated 5 months ago
- R package for bcbio single-cell RNA-seq analysis.☆30Updated last year
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆19Updated 2 weeks ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 8 months ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 7 years ago
- ☆25Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆29Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ☆30Updated 7 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆30Updated 5 years ago
- ☆47Updated 5 years ago